SWISS-MODEL Repository - Model Details

Model Overview
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1
872

Sequence
UniProt Q55418
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q55418: 1148.slr0833

Domain
Link to: [ InterPro ]
DnaB
DnaB_C
DnaB_C

Model 3D Structure
Model information:
Modelled residue range: 379 to 494
Based on template: [ 1mi8 ]  
Sequence Identity [%]: 87%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    379     SGCISGDS LISLASTGKR VSIKDLLDEK DFEIWAINEQ TMKLESAKVS
1mi8A     65534    sgaisgds lislastgkr vsikdlldek dfeiwaineq tmklesakvs
                                                                      
TARGET              sss  s ssss    ss ssshhh      sssssss     sssssss 
1mi8A               sss  s ssss    ss sss         sssssss     sssssss 


TARGET    427   RVFCTGKKLV YILKTRLGRT IKATANHRFL TIDGWKRLDE LSLKEHIALP
1mi8A     47    rvfmtgkklv yilktrlgrt ikatanhrfl tidgwkrlde lslkehialp
                                                                      
TARGET                 sss ssssss  ss ssss  ssss s  sssss       ssssss
1mi8A           ssssssssss ssssss  ss ssss  ssss s  sssss         ssss


TARGET    477   RKLESSSLQL MSDEELGL - ---------- ---------- ---       
1mi8A     97    rksdiswdsi vsitetgvee vfdltvpgph nfvandiivh asi       
                                                                      
TARGET          s  sssssss ssssssss                                   
1mi8A           s  sssssss ssssssssss sssss    s ssss  ssss s

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d1d3b7fc5bdededccc2c8cae8aa32fd0 on BC2-cluster at Sat Aug 30 06:25:39 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>d1d3b7fc5bdededccc2c8cae8aa32fd0
********************************************************************************
>1mi8A Evalue:5.20995e-50 SeqID:87.931 Method:BLAST Type:MODEL
----------------------------------***********-----------------------------------
>2r6aA Evalue:0 SeqID:45.144 Method:HHSEARCH Type:MODEL
-**********************************---------------------------------------------
>1dq3A Evalue:0 SeqID:17.864 Method:HHSEARCH Type:MODEL
-----------------------------------***************-****-******************------
>2r6aA Evalue:5.2E-10 SeqID:45.312 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------------------**-***-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1mi8A          379            494            BLAST          BUILT          
2r6aA          7              386            HHSEARCH       BUILT          
1dq3A          381            809            HHSEARCH       NOT BUILT      
2r6aA          803            866            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d1d3b7fc5bdededccc2c8cae8aa32fd0 on gopt-56.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 06:32:57 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.