SWISS-MODEL Repository - Model Details

Model Overview
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1
635

Sequence
UniProt Q55694
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
GIDA
GIDA_assoc_3

Model 3D Structure
Model information:
Modelled residue range: 12 to 625
Based on template: [ 3cp8 ]  
Sequence Identity [%]: 45%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    12       QFDVIVV GAGHAGCEAA LATARLGCRT LLLTLNLDRI AWQPCNPAVG
3cp8A     0     h--mydvivv gaghagceaa lavargglhc llitsdlsav armscnpaig
                                                                      
TARGET               sssss s  hhhhhhh hhhhh    s ssss             ssss
3cp8A                sssss s  hhhhhhh hhhhh    s ssss             ssss


TARGET    59    GPAKSQLTHE VDALGGEIGK MADRTYLQKR VLNISRGPAV WALRAQTDKR
3cp8A     48    gvakgqitre idalggemgk aidatgiqfr mlnrskgpam hspraqadkt
                                                                      
TARGET          s  hhhhhhh hhhh   hhh hhhhssssss ss          ssssssshh
3cp8A           shhhhhhhhh hhhh   hhh hhhhssssss ss          ssssssshh


TARGET    109   EYAAVMKNIV ENQPNLSIRE GMVTDLVLGD NDEIQGVQTY FGACFGAQSV
3cp8A     98    qyslymrriv ehepnidllq dtvigvsa-n sgkfssvtvr sgraiqakaa
                                                                      
TARGET          hhhhhhhhhh h   ssssss sssssss        ssssss   sssss ss
3cp8A           hhhhhhhhhh h   ssssss ssssssss s   ssssssss   sssss ss


TARGET    159   VITTGTFLGG KIWIGNKSMP AGRA-GEFAA VGLTETLNEL GFETGRLKTG
3cp8A     147   ilacgtflng lihigmdhfp ggrstaeppv eglteslasl gfsfgrlktg
                                                                      
TARGET          sss        ssss  sss               hhhhhhh      ssssss
3cp8A           sss        ssss  sss               hhhhhhh      ssssss


TARGET    208   TPARVDRRSV DYDKLEPQPP DEQVSWFSFD PEVWVEREQM NCYLTRTTAK
3cp8A     197   tppridsrsv dytivteqpg dvdpvpfsfs stsvanrnlv scyltkttek
                                                                      
TARGET          s  ssss         sss                          ssssss hh
3cp8A           s  ssss         sss                          ssssss hh


TARGET    258   THQLIKDNLH LSPIYGGFID SKGPRYCPSI EDKIVRFADK ESHQIFIEPE
3cp8A     247   thdilrtgfd rsplftg--- ------cpsi edkisrfpdk sshhiflepe
                                                                      
TARGET          hhhhhh                           hhhhhh       ssssssss
3cp8A           hhhhhh   h h                     hhhhhh       ssssssss


TARGET    308   GRDIPELYIQ GFSTGLPENV QLAMLQTLPG LENCVMLRPA YAVEYDFLPA
3cp8A     297   gtdtvemyvn gfstslpedi qiaglrsipg leeakmirpg yaieydffhp
                                                                      
TARGET              ssssss        hhh hhhhhh         sss    sssssss   
3cp8A               ssssss        hhh hhhhhh         sss    sssssss   


TARGET    358   TQCYPSLMTK KVAGLFCAGQ INGTTGYEEA AAQGLVAGIN AARHCQGKSL
3cp8A     347   wqirstmetr pvenlffagq ingtsgyeea aaqglmagin avrkilgkel
                                                                      
TARGET           sss  ssss    sssss         hhhh hhhhhhhhhh hhhhhh    
3cp8A            sss  ssss    sssss         hhhh hhhhhhhhhh hhhhhh    


TARGET    408   IIFSREGSYL GTLIDDLCTK DLREPYRMLT SRSEYRLILR SDNADQRLTP
3cp8A     397   ivlgrdqayi gvliddlitk etkepyrmft ssaehrlilr hdnadlrlrk
                                                                      
TARGET                  hh hhhhhhhh                            hhhhhhh
3cp8A                   hh hhhhhhhhh                           hhhhhhh


TARGET    458   LGREIGLIDD RRWDLFQTKQ ANITAEKERL YSTRIKEQDA VGKEIVDYTQ
3cp8A     447   igydcnlvss ddlhrtesii krvqhclevm ktakvtpae- intllmnkgl
                                                                      
TARGET          hhh      h hhhhhhhhhh hhhhhhhhhh hh          hhhhhhh  
3cp8A           hhh      h hhhhhhhhhh hhhhhhhh    h     hh  hhhhhhhh  


TARGET    508   QKIKGSIVLA ELLRRPGFHY PDLEKFQLGN EELKPEE--- ---KTSVEIE
3cp8A     496   qelktparal slikrpgisl qdilehslsv rsaaeelcnd prvaeqvqie
                                                                      
TARGET                                hhhhh   hh hhh              hhhh
3cp8A                      hhh        hhhhh   hh hhh   hh    hhhhhhhhh


TARGET    552   IKYSGYIKRQ QTQIEQVSRH SQKRLPPGLN YMAIETLSME AREKLTQFQP
3cp8A     546   ikyegyikre qlvadriarl dslhipdnfn ydslnslsse grekllkhrp
                                                                      
TARGET          h   hhhhhh hhhhhhhhhh h                      hhhhhhh  
3cp8A           h   hhhhhh hhhhhhhhhh h                      hhhhhhh  


TARGET    602   LTIGQAGRIG GVNPADINAL LVYL                            
3cp8A     596   atigqasril gvspsdvsil mirl-                           
                                                                      
TARGET            hhhhh       hhhhhhh h                               
3cp8A             hhhhh        hhhhhh h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 82fa17552b82f264cc192176457ae068 on BC2-cluster at Sat Aug 30 23:56:50 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>82fa17552b82f264cc192176457ae068
********************************************************************************
>3cp8A Evalue:0 SeqID:45.089 Method:HHSEARCH Type:MODEL
-*********************************-*******************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
3cp8A          12             625            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 82fa17552b82f264cc192176457ae068 on gopt-69.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 00:02:29 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.