SWISS-MODEL Repository - Model Details

Model Overview
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1
263

Sequence
UniProt Q55749
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
TP_methylase

Model 3D Structure
Model information:
Modelled residue range: 10 to 246
Based on template: [ 1pjq ]  
Sequence Identity [%]: 43%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1pjqA     1     mdhlpifcql rdrdclivgg gdvaerkarl lleagarltv naltfipqft
                                                                      
                                                       
1pjqA                        sssssss   hhhhhhhhh hhhh  ssss ss     hhh


                                                       
1pjqA     51    vwanegmltl vegpfdetll dscwlaiaat dddtvnqrvs daaesrrifc
                                                                      
                                                       
1pjqA           hhhh    ss sss    hhh     sssss    hhhhhhhh hhhhhh  ss


                                                       
1pjqA     101   nvvdapkaas fimpsiidrs plmvavsxgg tspvlarllr eklesllpqh
                                                                      
                                                       
1pjqA           sss            sssss   sssss       hhhhhhhh hhhhhh    


                                                       
1pjqA     151   lgqvaryagq lrarvkkqfa tmgerrrfwe kffvndrlaq slanadekav
                                                                      
                                                       
1pjqA            hhhhhhhh    hhhhhh     hhhhhhhh h   hhhhhh hhh   hhhh


TARGET    10                     MGKV YLVGAGPGDP GLITVKGKTL LENAEAVVYD
1pjqA     201   natterlfse pldh--rgev vlvgagpgda glltlkglqq iqqadivvyd
                                                                      
TARGET                             ss sssss          hhhhhh hh  sssss 
1pjqA           hhhhhhhh           ss sssss          hhhhhh hh  sssss 


TARGET    44    ALVSTAILAM VNPQAELIDA GKRRGRHTKL QSETTQLLAQ LAEKHAVVVR
1pjqA     249   rlvsddimnl vrrdadrvfv gkrh---cvp qeeinqillr eaqkgkrvvr
                                                                      
TARGET              hhhhh       sssss             hhhhhhhhh hhh  sssss
1pjqA               hhhhh       sssss             hhhhhhhhh hhh  sssss


TARGET    94    LKGGDPFIFG RGGEEMEDLV KAGIEVEVVP GITAGIAAPA YAQIPLTHRA
1pjqA     299   lkggdpfifg rggeeletlc hagipfsvvp gitaasgcsa ysgiplthrd
                                                                      
TARGET          ss          hhh    hh hh  sssss     hhhhhhh hh        
1pjqA           ss          hhh    hh hh  sssss     hhhhhhh hh        


TARGET    144   YSSSVTFVTG HESAGKYRPE VNWAAIAKGS ETIVIYMGVY SLATILPQLM
1pjqA     349   yaqsvrlvtg el-------- -dwenlaaek qtlvfymgln qaatiqekli
                                                                      
TARGET             sssss                 hhhh     sssss      hhhhhhhhh
1pjqA              sssss                hhhh      sssss      hhhhhhhhh


TARGET    194   LAGLGEDTPI ALIRWGTCPE QQKLVGTFAT ILAQIEVENF QAPAIVVIGA
1pjqA     396   afgmqadmpv alvengtsvk qrvvhgvltq lgela--qqv espaliivgr
                                                                      
TARGET          h      sss sssss       sssssss    hhh         ssssss  
1pjqA           h      sss sssss       sssssss    hhhh  h     ssssss  


TARGET    244   VVN ------ ----                                       
1pjqA     444   vvalrdklnw fsnh                                       
                                                                      
TARGET          hh                                                    
1pjqA           hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: fed857ed6a3af91842132dba6a990b85 on BC2-cluster at Mon Sep  1 01:28:20 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>fed857ed6a3af91842132dba6a990b85
****************************************************************************************
>1pjqA Evalue:0 SeqID:43.882 Method:HHSEARCH Type:MODEL
---*******************-*****************************---*********************-*****------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1pjqA          10             246            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: fed857ed6a3af91842132dba6a990b85 on gopt-58.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 01:30:37 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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