SWISS-MODEL Repository - Model Details

Model Overview
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1
469

Sequence
UniProt Q57918
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
GTP_EFTU
GTP_EFTU_D2

Model 3D Structure
Model information:
Modelled residue range: 5 to 469
Based on template: [ 1wb1 ]  
Sequence Identity [%]: 60%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    5            MEM KNVNVGLFGH IDHGKTQLAK QLTEIASTSA LDKPKESQKR
1wb1C     65532  egrph--mdf kninlgifgh idhgkttlsk vlteiastsa hdklpesqkr
                                                                      
TARGET                          sss       hhhhhh hh               hh  
1wb1C                           sss       hhhhhh hh               hh  


TARGET    48    GITIDLGFSS FTLDRYRITL VDAPGHSELI RTAIGAGNII DAALLVVDAK
1wb1C     44    gitidigfsa fklenyritl vdapghadli ravvsaadii dlalivvdak
                                                                      
TARGET                  ss sss  sssss            hhhhh        sssss   
1wb1C                   ss sss  sssss            hhhhh        sssss   


TARGET    98    EGPKTQTGEH LLVLDLLNIP TIVVINKIDI ANDEEIKRTE MFMKQILNST
1wb1C     94    egpktqtgeh mlildhfnip iivvitksdn agteeikrte mimksilqst
                                                                      
TARGET               hhhhh hhhhh    s ssssss       hhhhhhhh hhhhhhhh  
1wb1C                hhhhh hhhhh       sssss        hhhhhhh hhhhhhhh  


TARGET    148   INLKNSKIIK ISAKTGEGIG ELKKELKNLL DSLDIKRDIN SYLKMPIDHA
1wb1C     144   hnlknssiip isaktgfgvd elknliittl nnaeiirnte syfkmpldha
                                                                      
TARGET                ssss s       hh hhhhhhhhhh hh          ssss   ss
1wb1C                 ssss s       hh hhhhhhhhh               sss   ss


TARGET    198   FKIKGVGTVV TGTIHKGKVE VGDNLRILPI NHEVKVKSIQ CFKQDVSIAY
1wb1C     194   fpikgagtvv tgtinkgivk vgdelkvlpi nmstkvrsiq yfkesvmeak
                                                                      
TARGET          sss   ssss ssssssssss s ssssss      sssssss s  sssssss
1wb1C           sss   ssss ssss    ss s ssssss      sssssss s  ssssss 


TARGET    248   AGDRVGMALM GVEPESLFRG CILTSEDTKL KVVDKFIAKV KILELFKYNL
1wb1C     244   agdrvgmaiq gvdakqiyrg -iltskdtkl qtvdkivaki kisdifkynl
                                                                      
TARGET          s ssssssss             ssss      ssssssssss ss        
1wb1C             ssssssss             ssss      sssssssss            


TARGET    298   APKMKVHINI GLLTVPATII PYKIEKINDK EEPIILEEIK GGDSCYCIFK
1wb1C     294   tpkmkvhlnv gmlivpavav pfkkvtfgkt eeniilnevi sgne--yafe
                                                                      
TARGET             sssssss   ssssssss sssssss  s ssssss       sss  sss
1wb1C              sssssss   ssssssss sssssss  s ssssss            sss


TARGET    348   LEERVVVDEG DKILIMRLDL PPTTLRICGF GEVIDFGE-- -VEVKKIVVK
1wb1C     344   leekvlaevg drvlitrldl ppttlri-gh glieefkpik dlnikkevlr
                                                                      
TARGET          ss  sss    sssssss         sss   ssss              sss
1wb1C           ss  sss    ssssss                ssss     h h      sss


TARGET    395   EGKVVKKKDK IYIEGLASSK TAGEKLIGGK VYIPDKNIWG VIKGTFGTKG
1wb1C     394   egkvkidkgr tvidglaqsk vaaekligee isiegkdivg kikgtfgtkg
                                                                      
TARGET          sssss       sss         hhh                           
1wb1C           sssss       sss         hhh                           


TARGET    445   ALIAEFDEEV NGGEKVVLKR VRKWG                           
1wb1C     444   lltaefsgnv enrdkvilnr lrrwg-                          
                                                                      
TARGET                          sssss                                 
1wb1C                           sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 93c467e549446504b6714047c2b5e6a5 on BC2-cluster at Mon Sep  1 08:40:41 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>93c467e549446504b6714047c2b5e6a5
*******************************************************************************
>1wb1C Evalue:8.71488e-143 SeqID:60.897 Method:BLAST Type:MODEL
-******************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1wb1C          5              469            BLAST          BUILT          

FINISHED PIPELINE ON ID: 93c467e549446504b6714047c2b5e6a5 on gopt-65.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 08:41:25 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.