SWISS-MODEL Repository - Model Details

Model Overview
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1
452

Sequence
UniProt Q58811
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
AIRS
AIRS_C

Model 3D Structure
Model information:
Modelled residue range: 115 to 384
Based on template: [ 2z1e ]  
Sequence Identity [%]: 23%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    115        EQDDA GIVRADAKYI VAAIDGTHSR LSDFP-FLGG FHVTRAALRD
2z1eA     11    agg--elddg atipfgdkhi vftidghtvk plffpggdig rlavsgtvnd
                                                                      
TARGET                       sss  sss sssssss            hh hhhhhhhhhh
2z1eA                      sssss  sss sssssss            hh hhhhhhhhhh


TARGET    159   IYVMGAEAVA LISDVHLADD GDVGKIFDFT AGICAVSEAV NVPLIGGSTL
2z1eA     85    lavmgaepia lansmiigeg ldmevlkrvl ksmdetarev pvpivtgdtk
                                                                      
TARGET          hhh   ssss sssssssss    hhhhhhhh hhhhhhhhh       sssss
2z1eA           hhh   ssss sssssssss    hhhhhhhh hhhhhhhhh       sssss


TARGET    209   RVGGDMVIGD RLVSAVGAIG VIKEGEPTAR RNAEVGDVIL MTEGSGGGTI
2z1eA     135   vvedkiemf- -----vitag igiaehpvsd agakvgdavl vsgtigdhgi
                                                                      
TARGET          ss    sss       sssss ssss             ssss ss    hhhh
2z1eA           ss    sss       sssss ssss             ssss ss    hhhh


TARGET    259   TTTALYYGWF DVIYETLNVD FIK----ACQ NLIRSGLIKK IHAMTDVTNG
2z1eA     179   almshregia fetelksdva piwdvvkava etigw---en ihamkdptra
                                                                      
TARGET          hhhhhhh                        h hhh          sss     
2z1eA           hhhhhhh                 hhhhhhhh hhh      s sssss     


TARGET    305   GLRGDAYEIS KTAKVSLIFD KEKVYKTINP KVLEMLEVLN IDPLGVST-D
2z1eA     226   glsnalneia rksnvgilvr eadi--pirp evraasemlg ispydvaneg
                                                                      
TARGET           hhhhhhhhh hhh  sssss  hhhh    h hhhhhhhhh            
2z1eA            hhhhhhhhh hhh  sssss s        h hhhhhhhhh            


TARGET    354   SLMIICPEEY ADDIKKVT-- -----GAIEV GYVEEGEE - ----------
2z1eA     274   kvvmvvarey aeealeamrk tekgrnaaii geviadyrgk vlletgiggk
                                                                      
TARGET           sssss     hhhhhhh           sss ssss                 
2z1eA            ssssss    hhhhhhhh    hhh   sss ssss     s sssss   ss


TARGET          ---------- -                                          
2z1eA     324   rfmeppegdp v                                          
                                                                      
TARGET                                                                
2z1eA           sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 8291d9ebdbb76df44a9db46c88ab4695 on BC2-cluster at Wed Sep  3 15:36:19 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>8291d9ebdbb76df44a9db46c88ab4695
****************************************************************************
>2z1eA Evalue:5.6E-35 SeqID:23.322 Method:HHSEARCH Type:MODEL
-------------------*****************-***************************------------
>1cliA Evalue:7.6E-29 SeqID:17.664 Method:HHSEARCH Type:MODEL
-----------***-*************************************************------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2z1eA          115            384            HHSEARCH       BUILT          
1cliA          68             383            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 8291d9ebdbb76df44a9db46c88ab4695 on gopt-80.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 15:40:47 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.