SWISS-MODEL Repository - Model Details

Model Overview
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1
452

Sequence
UniProt Q58811
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
AIRS
AIRS_C

Model 3D Structure
Model information:
Modelled residue range: 68 to 383
Based on template: [ 1cli ]  
Sequence Identity [%]: 17%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    68      TLLKYPKS GVTMGRMGVG SRGEGDFFVH REIARIVKST KVKAYVSAEE
1cliA     5       tslsykda gvdida---- ----gnalvg r-ikgvvkkt rrp-evmggl
                                                                      
TARGET                         sss    sss  hhhh      hhhhh      sss   
1cliA                           h         hhh        hhhhh      sss   


TARGET    116   QDDAGIVRAD A----KYIVA AIDGTHSR-- ---LSDFPFL GGFHVTRAAL
1cliA     43    ggfgalcalp qkyrepvlvs gtdgvgtklr lamdlkrhdt igidlvamcv
                                                                      
TARGET               sss         ssss sss                    hhhhhhhhh
1cliA                sss       ssssss sss    hhh hhhhh       hhhhhhhhh


TARGET    157   RDIYVMGAEA VALISDVHLA DDGDVGKIFD FTAGICAVSE AVNVPLIGGS
1cliA     93    ndlvvqgaep lffldyyat- gkldvdtasa visgiaegcl qsgcslvgge
                                                                      
TARGET          hhhhh   ss sssssssss      hhhhhh hhhhhhhhhh hh     sss
1cliA           hhhhh   ss sssssssss      hhhhhh hhhhhhhhhh hh  ssssss


TARGET    207   TLRVGGDMVI GDRLVSAVGA IGVIKEGEPT ARRNAEVGDV ILMTEGSGGG
1cliA     142   taemp-gmyh gedydvagfc vgvvekseii dgskvsdgdv lialgssgph
                                                                      
TARGET          ss             ssssss ssss               ss ssssss    
1cliA           ssss           ssssss ssssss             ss ssssss    


TARGET    257   TITT-----T ALYYGWFD-- ---------V IYETLNVDFI KACQNLIRSG
1cliA     191   sngyslvrki levsgcdpqt teldgkplad hllaptriyv ksvleliekv
                                                                      
TARGET                                                    h hhhhhhh   
1cliA               hhhhhh hhh                hh hh       h hhhhhhhhh 


TARGET    291   LIKKIHAMTD VTNGGLRGDA YEISKTAKVS LIFDKEKVYK TINPKVLEML
1cliA     241   ---dvhaiah ltgggfweni prvl-pdntq avidesswq- -wpevfnwlq
                                                                      
TARGET                ssss s    hhhhh hh     sss ssss           hhhhhh
1cliA                 ssss s    hhhhh h      sss ssss           hhhhhh


TARGET    341   EVLNIDPLGV -----STDSL MIICPEEYAD DIKKVT---- -GAIEVGYVE
1cliA     285   tagnvehhem yrtfncgvgm iialpapevd kalallnang enawkigiik
                                                                      
TARGET          hhh              ssss ssss    hh hhhhh         sssssss
1cliA           hhh   hhh    h   ssss ssss    hh hhhhhhh     sssssssss


TARGET    381   EGE ------ -                                          
1cliA     335   asdseqrvvi e                                          
                                                                      
TARGET          ss                                                    
1cliA           ss   sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 8291d9ebdbb76df44a9db46c88ab4695 on BC2-cluster at Wed Sep  3 15:36:19 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>8291d9ebdbb76df44a9db46c88ab4695
****************************************************************************
>2z1eA Evalue:5.6E-35 SeqID:23.322 Method:HHSEARCH Type:MODEL
-------------------*****************-***************************------------
>1cliA Evalue:7.6E-29 SeqID:17.664 Method:HHSEARCH Type:MODEL
-----------***-*************************************************------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2z1eA          115            384            HHSEARCH       BUILT          
1cliA          68             383            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 8291d9ebdbb76df44a9db46c88ab4695 on gopt-80.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 15:40:47 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.