SWISS-MODEL Repository - Model Details

Model Overview
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1
657

Sequence
UniProt Q59E36
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q59E36: 7227.FBpp0090960

Domain
Link to: [ InterPro ]
ELM2

Model 3D Structure
Model information:
Modelled residue range: 179 to 225
Based on template: [ 2crg ]  
Sequence Identity [%]: 47%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (2crg): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1                DEWTIEDKVL FEQAFQFHGK SFHRIRQM-L PDKSIASLVK
2crgA     1     gssgssgm-- eewsaseacl feealekygk dfndirqdfl pwksltsiie
                                                                      
TARGET                         hhhhhh hhhhhhhh    hhhhh         hhhhhh
2crgA                          hhhhhh hhhhhhhh    hhhhhhh        hhhhh


TARGET    40    YYYSWKKT - ---------- --                              
2crgA     49    yyymwkttdr yvqqkrsgps sg                              
                                                                      
TARGET          hhhhhh                                                
2crgA           hhhhhh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 2crg is annotated as MONOMER 
 The template structure (2crg) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 The target and template sequences are too diverse (seqid: 47.917) to infer a conservation of the oligomeric state 
 Please use the advancend features of the SwissModel Project Mode 
       
 The target structure was calculated as SINGLE CHAIN

Template Selection 
 - Start SMR-Pipeline for:d7c6c4b5047d7085505b4d2ea9f1ddc0 on BC2-cluster at Fri Feb 22 03:02:21
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with A found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                       ******
 - building model based on 2crgA (179-225) was successful 
 -                                     *****************
 - building model based on 2iw5B (294-430) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:d7c6c4b5047d7085505b4d2ea9f1ddc0 on BC2-cluster at Fri Feb 22 03:03:31
2013

no data available!
Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.