SWISS-MODEL Repository - Model Details

Model Overview
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1
463

Sequence
UniProt Q5M954
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
tRNA_int_endo
tRNA_int_endo_N

Model 3D Structure
Model information:
Modelled residue range: 291 to 423
Based on template: [ 1r0v ]  
Sequence Identity [%]: 25%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1r0vA     62    dfstyyfvye dlrdrgnkvk iqgeflltkk pylpiserkt irmeeiaeka
                                                                      
                                                       
1r0vA            hhhhhhhhh hhhh     s ss  ssss s sssssss      hhhhhhhh


                                                       
1r0vA     112   rnfdelrlav vdeeseityf rvyepdmmge qkeelpeiag vlsdeyvitk
                                                                      
                                                       
1r0vA                sssss ss   sssss sss               sss sss  ssss 


TARGET    291                   IFEYL QLSLEEAFFL AYALGCLSIY YEKEPLTIVK
1r0vA     162   qteifsryfy gse--kgdlv tlslieslyl l-dlgklnll nadre----e
                                                                      
TARGET                                   hhhhhhh h                    
1r0vA             hhhh      ss  s  ss ss hhhhhhh h hh sssss    hh    h


TARGET    326   LWQAFTAVQP TFRTTYMAYH YFRSKGWVPK VGLKYGTDLL LYRKGPP---
1r0vA     205   lvkrarever nfdrryevyr nlkergfvvk tgfkfgsefr vyrkvesvdd
                                                                      
TARGET          hhhhhhhh    hhhhhhhhh hhhh   sss sss   ssss ss        
1r0vA           hhhhhhhh    hhhhhhhhh hhhh   sss ss     sss ss      hh


TARGET    373   FYHASYSVII ELVDDNFEGS LRRPFSWKSL AALSRVSGNV SKELMLCYLI
1r0vA     255   lphseylvdi --ad-s---- --reirlidl aravrlaqnv rkrmvfaygk
                                                                      
TARGET              ssssss s   sss    sss   hhhh hhhhhhhhhh   sssss   
1r0vA           h   ssssss   s              hhhh hhhhhhhhh    ssssss  


TARGET    423   K --------                                            
1r0vA     296   nylcfervkv                                            
                                                                      
TARGET                                                                
1r0vA           ssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 8845f745ddaa85a123f43626e395d323 on BC2-cluster at Mon Sep  1 07:31:35 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>8845f745ddaa85a123f43626e395d323
******************************************************************************
>1r0vA Evalue:1.7E-27 SeqID:25.735 Method:HHSEARCH Type:MODEL
------------------------------------------------*****-***********-*****-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1r0vA          291            423            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 8845f745ddaa85a123f43626e395d323 on gopt-77.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 07:34:57 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.