SWISS-MODEL Repository - Model Details

Model Overview
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1
785

Sequence
UniProt Q5RD14
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PYRIN
HIN
HIN

Model 3D Structure
Model information:
Modelled residue range: 199 to 390
Based on template: [ 2oq0 ]  
Sequence Identity [%]: 96%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    199     VLQKGPVI VKVLSTTKPF EYETPEMEKK IMFHATVATQ TQFFHVKVLN
2oq0B     12      vlqkrpvi vkvlsttkpf eyetpexekk ixfhatvatq tqffhvkvln
                                                                      
TARGET            sss   ss sssssss  s ssss   sss sssssssss   ssssssss 
2oq0B             sss   ss sssssss  s ssss   sss sssssssss   ssssssss 


TARGET    247   TSLKEKFNGK KIIIISDYLE YDSLLEVNEE STVSEAGPNQ KFEVPNKIIN
2oq0B     60    tslkekfngk kiiiisdyle ydsllevnee stvseagpnq tfevpnkiin
                                                                      
TARGET                     ssssss sss s  ssss     sssss          hhhhh
2oq0B                      ssssss sss s  ssss     sssss          hhhhh


TARGET    297   RAKETLKIDI LHKQASGNIV YGVFTLHKKT VNQKTTIYKI QDDRGKMDVV
2oq0B     110   raketlkidi lhkqasgniv ygvfxlhkkt vnqkttiyei qddrgkxdvv
                                                                      
TARGET          hhh    hhh hhh    sss ssssssssss ss  ssssss ss  ssssss
2oq0B           hhh    hhh hhh    sss ssssssssss ss  ssssss ss  ssssss


TARGET    347   GTGQCHNIPC EEGDKLQLYC FRLRKKNQMS TLISEMHSFI QIKK      
2oq0B     160   gtgqchnipc eegdklqlfc frlrkknqxs klisexhsfi qikk-     
                                                                      
TARGET          s             sssssss ssssss  ss ssss    ss sss       
2oq0B           s             sssssss ssssss  ss ssss    ss sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 10a0005f69e1516285b82e4508ba79c0 on BC2-cluster at Sat Aug 30 18:24:36 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>10a0005f69e1516285b82e4508ba79c0
*******************************************************************************
>2oq0B Evalue:2.80821e-97 SeqID:96.875 Method:BLAST Type:MODEL
--------------------*******************----------------------------------------
>3b6yA Evalue:1.47753e-96 SeqID:96.237 Method:BLAST Type:MODEL
---------------------------------------------------------*******************---
>2yu0A Evalue:3.9E-41 SeqID:51.807 Method:HHSEARCH Type:MODEL
*********----------------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2oq0B          199            390            BLAST          BUILT          
3b6yA          576            761            BLAST          BUILT          
2yu0A          6              88             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 10a0005f69e1516285b82e4508ba79c0 on gopt-63.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 18:30:12 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.