SWISS-MODEL Repository - Model Details

Model Overview
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1
149

Sequence
UniProt Q5UNU9
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DNA_binding_1

Model 3D Structure
Model information:
Modelled residue range: 3 to 147
Based on template: [ 1sfe ]  
Sequence Identity [%]: 29%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3           IEII ETKIGLVKII YDDTQTKIIS VMFIDS---- ----------
1sfeA     12    lavr--yala dcelgrclva eserg--ica illgdddatl iselqqmfpa
                                                                      
TARGET                 sss ss  sssss      ssssss s  sss               
1sfeA              s  ssss ss  ssssss ss  s  sss ssss  hhhh hhhhhhh   


TARGET    33    ----SKIKPV KNSLSGLHKY FKGQNDYFTN LDLELKGTPF QRKVWKQILE
1sfeA     58    adnapadlmf qqhvrevias lnqrdtpl-t lpldirgtaf qqqvwqalrt
                                                                      
TARGET              ssss   hhhhhhhhhh hh                 hh hhhhhhhhh 
1sfeA                  hhh hhhhhhhhhh hh                 hh hhhhhhhhh 


TARGET    79    IPFGETRTYS DIAMAIGNPK AVRAVANACG ANPIAIIVPC HRVVGKNND-
1sfeA     107   ipcgetvsyq qlanaigkpk avravasaca anklaivipc hrvvrgdgsl
                                                                      
TARGET                sssh hhhhh       hhhhhhhhh             sss      
1sfeA                 sssh hhhhh       hhhhhhhhh             sss      


TARGET    128   GGYEYGLEKK LWLLDFEKKN                                 
1sfeA     157   sgyrwgvsrk aqllrreaen -                               
                                                                      
TARGET                hhhh hhhhhhh                                    
1sfeA                 hhhh hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: be3c0f540cb5920f19df6fe1dccc815e on BC2-cluster at Sat Aug 30 14:40:11 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>be3c0f540cb5920f19df6fe1dccc815e
***************************************************************************
>1sfeA Evalue:4.9E-44 SeqID:29.878 Method:HHSEARCH Type:MODEL
-*************************************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1sfeA          3              147            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: be3c0f540cb5920f19df6fe1dccc815e on gopt-67.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 14:41:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.