SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt Q5Y4N8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
7tm_2
GPS
EGF_CA
EGF_CA
EGF_CA
EGF_CA
EGF_CA
cEGF

Model 3D Structure
Model information:
Modelled residue range: 271 to 358
Based on template: [ 1lmj ]  
Sequence Identity [%]: 38%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    271     TDIDECDD I--CPSNSSC TNTLGSYFCT CHPGFASSNG QLNFTDQEVT
1lmjA     3       tdidecri spdlcgrgqc vntpgdfeck cdegyes--- --gfmm-mkn
                                                                      
TARGET                hhh          ss sss  sssss    sss               
1lmjA                  hh          ss sss  sssss    ssss      s      s


TARGET    317   CEDIDECTQD PFRCGRNSSC TNVPGSYNCS CLPDFRMDPG GS --     
1lmjA     45    cmdidecqrd pllc-rggvc hntegsyrce cppghqlspn isaci     
                                                                      
TARGET           sss               ss sss  sssss                      
1lmjA           ssss               ss sss  sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: fe6d250a6bc6d54dddfe8ba6900c9fce on BC2-cluster at Sat Aug 30 02:32:30 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>fe6d250a6bc6d54dddfe8ba6900c9fce
******************************************************************************
>2bo2A Evalue:6.8E-20 SeqID:37.903 Method:HHSEARCH Type:MODEL
------------*********---------------------------------------------------------
>1lmjA Evalue:5.9E-14 SeqID:38.889 Method:HHSEARCH Type:MODEL
----------------------********------------------------------------------------
>2bo2A Evalue:1.1E-19 SeqID:34.351 Method:HHSEARCH Type:MODEL
---------------***********----------------------------------------------------
>1uzjA Evalue:1.4E-17 SeqID:20.312 Method:HHSEARCH Type:MODEL
-------------------******-****------------------------------------------------
>1uzjA Evalue:2.5E-17 SeqID:24.157 Method:HHSEARCH Type:MODEL
-------***-******-***---------------------------------------------------------
>1z1yA Evalue:2.5E-09 SeqID:21.656 Method:HHSEARCH Type:MODEL
-------------************-----------------------------------------------------
>1z1yA Evalue:4.4E-09 SeqID:19.780 Method:HHSEARCH Type:MODEL
---------------**-****-**-****------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2bo2A          143            256            HHSEARCH       BUILT          
1lmjA          271            358            HHSEARCH       BUILT          
2bo2A          181            306            HHSEARCH       BUILT          
1uzjA          233            359            HHSEARCH       BUILT          
1uzjA          81             257            HHSEARCH       BUILT          
1z1yA          153            303            HHSEARCH       NOT BUILT      
1z1yA          185            355            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: fe6d250a6bc6d54dddfe8ba6900c9fce on gopt-68.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:40:01 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.