SWISS-MODEL Repository - Model Details

Model Overview
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1
1865

Sequence
UniProt Q60544
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Bromodomain
Bromodomain
TBP-binding
DUF3591

Model 3D Structure
Model information:
Modelled residue range: 1354 to 1620
Based on template: [ 1eqf ]  
Sequence Identity [%]: 99%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1354    GTTVHCDY LNRPHKSIHR RRTDPMVTLS SILESIINDM RDLPNTYPFH
1eqfA     1359    gttvhcdy lnrphksihr rrtdpmvtls silesiindm rdlpntypfh
                                                                      
TARGET                                    hhhhhh hhhhhhhhhh h     hhh 
1eqfA                                     hhhhhh hhhhhhhhhh h     hhh 


TARGET    1402  TPVNAKVVKD YYKIITRPMD LQTLRENVRK RLYPSREEFR EHLELIVKNS
1eqfA     1407  tpvnakvvkd yykiitrpmd lqtlrenvrk rlypsreefr ehlelivkns
                                                                      
TARGET                   h    h       hhhhhhhhhh       hhhh hhhhhhhhhh
1eqfA                         h       hhhhhhhhhh       hhhh hhhhhhhhhh


TARGET    1452  ATYNGPKHSL TQISQSMLDL CDEKLKEKED KLARLEKAIN PLLDDDDQVA
1eqfA     1457  atyngpkhsl tqisqsmldl cdeklkeked klarlekain pllddddqva
                                                                      
TARGET          hhhh    hh hhhhhhhhhh hhhhhh   h hhhhhhhhh       hhhhh
1eqfA           hhhh    hh hhhhhhhhhh hhhhhh   h hhhhhhhh    h   hhhhh


TARGET    1502  FSFILDNIVT QKMMAVPDSW PFHHPVNKKF VPDYYKVIVS PMDLETIRKN
1eqfA     1507  fsfildnivt qkmmavpdsw pfhhpvnkkf vpdyykvivn pmdletirkn
                                                                      
TARGET          hhhhhhhhhh h        h hh           hhhhh       hhhhhhh
1eqfA           hhhhhhhhhh hhhh     h hh           h   h       hhhhhhh


TARGET    1552  ISKHKYQSRE SFLDDVNLIL ANSVKYNGSE SQYTKTAQEI VNVCYQTLTE
1eqfA     1557  iskhkyqsre sflddvnlil ansvkyngpe sqytktaqei vnvcyqtlte
                                                                      
TARGET          hhh     hh hhhhhhhhhh hhhhhhh     hhhhhhhhh hhhhhhhhh 
1eqfA           hhh     hh hhhhhhhhhh hhhhhhh     hhhhhhhhh hhhhhhhhh 


TARGET    1602  YDEHLTQLEK DICTAKEAA                                  
1eqfA     1607  ydehltqlek dictakeaa-                                 
                                                                      
TARGET            hhhhhhhh hhhhhhhh                                   
1eqfA             hhhhhhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 82b0a339ccd183a2506b6c3348c9fa2a on BC2-cluster at Mon Sep  1 00:38:05 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>82b0a339ccd183a2506b6c3348c9fa2a
**********************************************************************************
>1eqfA Evalue:1.21435e-149 SeqID:99.251 Method:BLAST Type:MODEL
-----------------------------------------------------------***********------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1eqfA          1354           1620           BLAST          BUILT          

FINISHED PIPELINE ON ID: 82b0a339ccd183a2506b6c3348c9fa2a on gopt-58.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 00:51:10 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.