This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
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Template's ligands section Ligands in the template: NAG: 3. Ligands in the template that will be assessed: NAG1117, NAG1117, NAG1118. Model's ligands section NAG1117 The ligand binds less than 3 template residues. Given the properties calculated previously, the ligand D.NAG1117 will not be included in the model. NAG1117: conservation:False, RMSD:False, included: False
NAG1118 The ligand binds less than 3 template residues. Given the properties calculated previously, the ligand D.NAG1118 will not be included in the model. NAG1118: conservation:False, RMSD:False, included: False
NAG1117 The ligand binds less than 3 template residues. Given the properties calculated previously, the ligand A.NAG1117 will not be included in the model. NAG1117: conservation:False, RMSD:False, included: False
No ligands were included in the model.
Oligomer Modelling Log
Quaternary Structure Annotation of the Template 2jjs is annotated as HETERO DIMER The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry The following biological unit was used to build the template structure: 2jjs.pdb2.gz
Quaternary Structure Modelling of the Target Protein 2jjs_2
Template Selection
- Start SMR-Pipeline for:8a145ca3674e8382871ef7c33cb94b7b on BC2-cluster at Fri Feb 22 13:21:18
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
FATAL - No md5 found in hash for: 3v6fF
FATAL - No md5 found in hash for: 3v6fB
FATAL - No md5 found in hash for: 3v6fL
FATAL - No md5 found in hash for: 3v6fD
FATAL - No md5 found in hash for: 3v6zD
FATAL - No md5 found in hash for: 3v6zB
FATAL - No md5 found in hash for: 4dvbB
FATAL - No md5 found in hash for: 4dvbL
FATAL - No md5 found in hash for: 4dw2L
FATAL - No md5 found in hash for: 4hc1L
FATAL - No md5 found in hash for: 4hc1N
FATAL - No md5 found in hash for: 3vfgL
FATAL - No md5 found in hash for: 4i9wD
FATAL - No md5 found in hash for: 4i9wF
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
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- No template with C found
- No template with A found
- No template with H found
- No template with P found
- No template with A found
- No template with H found
- No template with B found
- No template with A found
- No template with B found
- No template with H found
- No template with D found
- No template with H found
- No template with D found
- No template with H found
- No template with S found
- No template with H found
- No template with O found
- No template with F found
- No template with N found
- No template with P found
- No template with B found
- No template with L found
- No template with D found
- No template with Q found
- No template with M found
- No template with H found
- No template with H found
- No template with P found
- No template with H found
- No template with P found
- No template with A found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with B found
- No template with D found
- No template with B found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with C found
- No template with D found
- No template with H found
- No template with A found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with B found
- No template with D found
- No template with P found
- No template with H found
- No template with H found
- No template with H found
- No template with P found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with D found
- No template with B found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with D found
- No template with A found
- No template with D found
- No template with B found
- No template with B found
- No template with H found
- No template with H found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with B found
- No template with C found
- No template with P found
- No template with H found
- No template with P found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with C found
- No template with C found
- No template with A found
- No template with B found
- No template with A found
- No template with H found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with S found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with A found
- No template with H found
- No template with A found
- No template with B found
- No template with H found
- No template with C found
- No template with D found
- No template with M found
- No template with B found
- No template with B found
- No template with E found
- No template with A found
- No template with C found
- No template with H found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with I found
- No template with H found
- No template with A found
- No template with H found
- No template with P found
- No template with B found
- No template with M found
- No template with Q found
- No template with A found
- No template with H found
- No template with P found
- No template with B found
- No template with M found
- No template with Q found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with B found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with D found
- No template with F found
- No template with B found
- No template with E found
- No template with B found
- No template with D found
- No template with B found
- No template with D found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with H found
- No template with A found
- No template with H found
- No template with H found
- No template with C found
- No template with A found
- No template with H found
- No template with A found
- No template with B found
- No template with E found
- No template with A found
- No template with B found
- No template with H found
- No template with C found
- No template with D found
- No template with E found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with E found
- No template with L found
- No template with P found
- No template with H found
- No template with P found
- No template with H found
- No template with B found
- No template with A found
- No template with B found
- No template with C found
- No template with D found
- No template with E found
- No template with F found
- No template with H found
- No template with T found
- No template with H found
- No template with P found
- No template with H found
- No template with I found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with H found
- No template with H found
- No template with P found
- No template with H found
- No template with P found
- No template with A found
- No template with B found
- No template with H found
- No template with D found
- No template with D found
- No template with B found
- No template with C found
- No template with C found
- No template with J found
- No template with B found
- No template with I found
- No template with A found
- No template with H found
- No template with C found
- No template with J found
- No template with B found
- No template with I found
- No template with A found
- No template with H found
- No template with J found
- No template with I found
- No template with K found
- No template with H found
- No template with H found
- No template with C found
- No template with H found
- No template with H found
- No template with I found
- No template with B found
- No template with H found
- No template with A found
- No template with A found
- No template with H found
- No template with H found
- No template with P found
- No template with H found
- No template with P found
- No template with B found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with H found
- No template with P found
- No template with H found
- No template with H found
- No template with J found
- No template with H found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with E found
- No template with G found
- No template with J found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with H found
- No template with I found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with J found
- No template with I found
- No template with H found
- No template with H found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with C found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with A found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with H found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with B found
- No template with D found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with D found
- No template with D found
- No template with B found
- No template with A found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with C found
- No template with Q found
- No template with M found
- No template with K found
- No template with D found
- No template with P found
- No template with L found
- No template with H found
- No template with B found
- No template with Q found
- No template with M found
- No template with K found
- No template with D found
- No template with P found
- No template with L found
- No template with H found
- No template with B found
- No template with Q found
- No template with K found
- No template with C found
- No template with D found
- No template with P found
- No template with H found
- No template with A found
- No template with B found
- No template with B found
- No template with B found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with H found
- No template with H found
- No template with F found
- No template with B found
- No template with D found
- No template with B found
- No template with B found
- No template with P found
- No template with H found
- No template with B found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with E found
- No template with D found
- No template with F found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with D found
- No template with F found
- No template with B found
- No template with H found
- No template with D found
- No template with F found
- No template with B found
- No template with H found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with H found
- No template with P found
- No template with H found
- No template with P found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with A found
- No template with H found
- No template with C found
- No template with J found
- No template with B found
- No template with I found
- No template with A found
- No template with H found
- No template with C found
- No template with J found
- No template with B found
- No template with I found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with B found
- No template with H found
- No template with B found
- No template with A found
- No template with C found
- No template with B found
- No template with D found
- No template with A found
- No template with C found
- No template with B found
- No template with D found
- No template with H found
- No template with H found
- No template with I found
- No template with H found
- No template with I found
- No template with H found
- No template with B found
- No template with H found
- No template with B found
- No template with I found
- No template with X found
- No template with H found
- No template with V found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with L found
- No template with D found
- No template with J found
- No template with F found
- No template with K found
- No template with B found
- No template with I found
- No template with A found
- No template with H found
- No template with B found
- No template with C found
- No template with A found
- No template with I found
- No template with B found
- No template with H found
- No template with A found
- No template with I found
- No template with B found
- No template with H found
- No template with H found
- No template with P found
- No template with H found
- No template with P found
- No template with B found
- No template with D found
- No template with B found
- No template with D found
- No template with B found
- No template with D found
- No template with B found
- No template with D found
- No template with B found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with C found
- No template with H found
- No template with C found
- No template with H found
- No template with Y found
- No template with B found
- No template with C found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with B found
- No template with H found
- No template with C found
- No template with D found
- No template with E found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with A found
- No template with A found
- No template with C found
- No template with B found
- No template with H found
- No template with H found
- No template with Y found
- No template with A found
- No template with C found
- No template with H found
- No template with H found
- No template with H found
- No template with Y found
- No template with H found
- No template with Y found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with H found
- No template with J found
- No template with H found
- No template with J found
- No template with H found
- No template with H found
- No template with H found
- No template with I found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with B found
- No template with W found
- No template with Y found
- No template with N found
- No template with H found
- No template with H found
- No template with B found
- No template with B found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with B found
- No template with E found
- No template with D found
- No template with G found
- No template with K found
- No template with L found
- No template with H found
- No template with I found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with H found
- No template with B found
- No template with B found
- No template with I found
- No template with C found
- No template with J found
- No template with A found
- No template with H found
- No template with B found
- No template with D found
- No template with M found
- No template with P found
- No template with B found
- No template with L found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with F found
- No template with H found
- No template with B found
- No template with D found
- No template with F found
- No template with H found
- No template with B found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with H found
- No template with H found
- No template with W found
- No template with P found
- No template with F found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with B found
- No template with C found
- No template with A found
- No template with B found
- No template with H found
- No template with A found
- No template with B found
- No template with H found
- No template with A found
- No template with B found
- No template with H found
- No template with H found
- No template with L found
- No template with H found
- No template with I found
- No template with L found
- No template with H found
- No template with I found
- No template with H found
- No template with C found
- No template with E found
- No template with H found
- No template with F found
- No template with E found
- No template with H found
- No template with B found
- No template with D found
- No template with H found
- No template with P found
- No template with A found
- No template with H found
- No template with X found
- No template with Z found
- No template with A found
- No template with H found
- No template with X found
- No template with Z found
- No template with B found
- No template with C found
- No template with E found
- No template with F found
- No template with B found
- No template with B found
- No template with H found
- No template with H found
- No template with A found
- No template with H found
- No template with A found
- No template with H found
- No template with D found
- No template with B found
- No template with B found
- No template with B found
- No template with D found
- No template with B found
- No template with A found
- No template with H found
- No template with A found
- No template with C found
- No template with H found
- No template with Y found
- No template with H found
- No template with Y found
- No template with B found
- No template with C found
- No template with H found
- No template with H found
- No template with B found
- No template with H found
- No template with H found
- No template with B found
- No template with G found
- No template with J found
- No template with H found
- No template with B found
- No template with H found
- No template with B found
- No template with B found
- No template with F found
- No template with D found
- No template with E found
- No template with D found
- No template with P found
- No template with H found
- No template with Q found
- No template with F found
- No template with H found
- No template with B found
- No template with D found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with A found
- No template with B found
- No template with H found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with H found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with A found
- No template with C found
- No template with E found
- No template with A found
- No template with C found
- No template with E found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with A found
- No template with B found
- No template with C found
- No template with E found
- No template with J found
- No template with Y found
- No template with I found
- No template with X found
- No template with H found
- No template with V found
- No template with K found
- No template with Z found
- No template with H found
- No template with H found
- No template with H found
- No template with H found
- No template with B found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with A found
- No template with C found
- No template with B found
- No template with D found
- No template with B found
- No template with H found
- No template with H found
- No template with A found
- No template with X found
- No template with H found
- No template with C found
- No template with A found
- No template with X found
- No template with H found
- No template with C found
- No template with A found
- No template with B found
- No template with C found
- No template with D found
- No template with E found
- No template with F found
- No template with H found
- No template with M found
- No template with I found
- No template with J found
- No template with H found
- No template with P found
- No template with I found
- No template with H found
- No template with H found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ******************************
- building model based on 2jjsD (19-132) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:8a145ca3674e8382871ef7c33cb94b7b on BC2-cluster at Fri Feb 22 13:25:55
2013
3qum: CRYSTAL STRUCTURE OF HUMAN PROSTATE SPECIFIC ANTIGEN (PSA)SANDWICH WITH A HIGH AFFINITY AND A PCA SELECTIVE ANTIBOD Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1fh5: CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MONOCLONAL ANTIBODY MAK33 Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1mjj: HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAFRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12 AND A TRANSITION-STATE ANALOG Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
3ujt: STRUCTURE OF THE FAB FRAGMENT OF AB-52, AN ANTIBODY THAT BANTIGEN OF FRANCISELLA TULARENSIS Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1nbv: AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX Solved by: X-RAY, Resolution: 2.66A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1kno: CRYSTAL STRUCTURE OF THE COMPLEX OF A CATALYTIC ANTIBODY FAB WITH A TRANSITION STATE ANALOG: STRUCTURAL SIMILARITIES IN ESTERASE-LIKE ABZYMES Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1cbv: AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX Solved by: X-RAY, Resolution: 2.66A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1gpo: CRYSTAL STRUCTURE OF THE RATIONALLY DESIGNED ANTIBODY M41 AS A FAB FRAGMENT Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]