SWISS-MODEL Repository - Model Details

Model Overview
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1
290

Sequence
UniProt Q76BW5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Glyco_hydro_16
XET_C

Model 3D Structure
Model information:
Modelled residue range: 26 to 289
Based on template: [ 1umz ]  
Sequence Identity [%]: 42%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    26         AGFYE KFDVVGAGDH VRVVSDDGKT QQVALTLDRS SGSGFTSKDT
1umzA     6     pvd--vafgr nyvptwafdh ikyf-ngg-- neiqlhldky tgtgfqskgs
                                                                      
TARGET                     sssss    s ssss        ssssss      ssssss s
1umzA                      sssss    s ssss s     sssssss      ssssss s


TARGET    71    YLFGEFSVQM KLVGGNSAGT VTSFYLSSGE GDGHDEIDIE FMGNLSGNPY
1umzA     51    ylfghfsmqm klvpgdsagt vtafylssqn -sehdeidfe flgnrtgqpy
                                                                      
TARGET          ssssssssss s       ss ssssssss       ssssss sss       
1umzA           ssssssssss s       ss ssssssss      sssssss sss       


TARGET    121   VMNTNVWANG DGKKEHQFYL WFDPTADFHT YKIIWNPQNI IFQVDDVPVR
1umzA     100   ilqtnvftgg kgdreqriyl wfdptkefhy ysvlwnmymi vflvddvpir
                                                                      
TARGET          sssssss        sssss          ss ssssss sss sssss ssss
1umzA           sssssssss      sssss          ss ssssss sss sssss ssss


TARGET    171   TFKKYD--DL AYPQSKPMRL HATLWDGSYW ATRHGDVKID WSGAPFVVSY
1umzA     150   vfknckdlgv kfpfnqpmki ysslwnaddw atrgglektd wskapfiasy
                                                                      
TARGET          ssss               ss sssssss                    sssss
1umzA           ssss               ss sssssss                    sssss


TARGET    219   RGYSTNACVN NNPAGGWSSS WCPEGTSAWI ----HRELDG AELGTVAWAE
1umzA     200   rsfhidgcea sve-----ak fcatqgarww dqkefqdlda fqyrrlswvr
                                                                      
TARGET          s  sssssss  sss  sss                      h hhhhhhhhhh
1umzA           s  sssssss                                h hhhhhhhhhh


TARGET    265   RNYMSYNYCA DGWRFPQGFP AECYR ---                       
1umzA     245   qkytiynyct drsryps-mp peckrdrdi                       
                                                                      
TARGET          h ssssss               hhhh                           
1umzA           h ssssss               hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: f5e44cbd81447329e0ee1d940f8076ea on BC2-cluster at Wed Sep  3 20:02:31 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>f5e44cbd81447329e0ee1d940f8076ea
*************************************************************************
>1umzA Evalue:0 SeqID:42.963 Method:HHSEARCH Type:MODEL
------****************************************************-**************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1umzA          26             289            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: f5e44cbd81447329e0ee1d940f8076ea on gopt-68.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 20:04:54 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.