SWISS-MODEL Repository - Model Details

Model Overview
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1
345

Sequence
UniProt Q7JQ07
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Transposase_1
HTH_24

Model 3D Structure
Model information:
Modelled residue range: 119 to 345
Based on template: [ 2f7t ]  
Sequence Identity [%]: 88%
Model date: 2008-07-27
Revision date: 2008-07-27

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-27. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    119     WVPHELNE RQMERRKNTC EILLSRYKRK SFLHRIVTGD EKWIFFVSPK
2f7tA     119     wvphelne rqmerrkntc eillsrykrk sflhrivtgd ekwiffvnpk
                                                                      
TARGET                   h hhhhhhhhhh hhhhhhhhh      ssssss ssss      
2f7tA                    h hhhhhhhhhh hhhhhhhhh      ssssss ssssss   s


TARGET    167   RKKSYVDPGQ PATSTARPNR FGKKTMLCVW WDQSGVIYYE LLKRGETVNT
2f7tA     190   ---------- ---------- ---ktmlcvw wdqsgviyye llkpgetvna
                                                                      
TARGET                hhhh hhhhhhhhhh     ssssss ss  ssssss ss       h
2f7tA                                    sssssss ss  ssssss ss       h


TARGET    217   ARYQQQLINL NRALQRKRPE YQKRQHRVIF LHDNAPSHTA RAVRDTLETL
2f7tA     217   aryqqqlinl nralqrkrpe yqkrqhrvif lhdnapshta ravrdtletl
                                                                      
TARGET          hhhhhhhhhh hhhhhh   h hh     sss s          hhhhhhhhhh
2f7tA           hhhhhhhhhh hhhhhh   h hh     sss s          hhhhhhhhhh


TARGET    267   NWEVLPHAAY SPDLAPSDYH LFASMGHALA EQRFDSYESV KKWLDEWFAA
2f7tA     267   nwevlphaay spdlapsdyh lfasmghala eqrfdsyesv kkwldewfaa
                                                                      
TARGET            sss           hhhhh hhhhhhhhhh       hhhh hhhhhhhhh 
2f7tA             sss           hhhhh hhhhhhhhhh       hhhh hhhhhhhhh 


TARGET    317   KDDEFYWRGI HKLPERWEKC VASDGKYLE                       
2f7tA     317   kddefywrgi hklperwekc vasdgkyfe-                      
                                                                      
TARGET             hhhhhh    hhhhhhhh hhh                             
2f7tA              hhhhhh    hhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d69c6e59333814603f332f8a313f40a5 on BC2-cluster at Sun Jul 27 18:43:53 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>d69c6e59333814603f332f8a313f40a5
***************************************************************************************
>2f7tA Evalue:1.20911e-107 SeqID:88.106 Method:BLAST Type:MODEL
-----------------------------*************-----****************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2f7tA          119            345            BLAST          BUILT          

FINISHED PIPELINE ON ID: d69c6e59333814603f332f8a313f40a5 on gopt-26.cluster.bc2.ch BC2-Cluster at
Sun Jul 27 18:48:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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