SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
|
|
|
|
|||||||||||||||||||||||||||||||
|
Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
|
Alignment
3g07D 431 dgrlrvlkpe wfrgrdvldl gcnvghltls iackwgpsrx vgldidsrli
3g07D hhhh sssss s hhhhh hhhh ss ssss hhhh
TARGET 1 F PANVFFRHTN YVLKDESLMA SDTQQYDLIL
3g07D 481 hsarqnivpl dgadtsv--f pnnvvfvtgn yvldrddlve aqtpeydvvl
TARGET hhhhh ssss
3g07D hhhhh sssssss hhhhh ssss
TARGET 32 CLSVTKWIHL NFGDNGLKMA FKRMFNQLRP GGKLILEAQN WASYKKKKNL
3g07D 580 clsltkwvhl nwgdeglkrx frriyrhlrp ggilvlepqp wssygkrktl
TARGET sss hhhhhh hhhhhhh hhhhhhh sssssss hhh
3g07D sss hhhhhh hhhhhhh hhhhhhh sssssss hhh
TARGET 82 TPEIYNNYKQ IEFFPNKFHE YLLSSEVGFS HSYTLGVPRH MNKGFCRPIQ
3g07D 630 tetiyknyyr iqlkpeqfss yltspdvgfs -syel----- -----vrpvy
TARGET hhhhhhhhh hh hh ssssshhh ss
3g07D hhhhhhhhh hh hh ssss s ss
TARGET 132 LYAKG
3g07D 680 lfhkar
TARGET sssss
3g07D sssss
Template's ligands section
Ligands in the template:SAM : 1.
Ligands in the template that will be assessed: SAM701.
Model's ligands section
SAM701
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand D.SAM701 will not be included in the model.
SAM701: conservation:False, RMSD:False, included: False
No ligands were included in the model.
Quaternary Structure Annotation of the Template
3g07 is annotated as MONOMER
PISA was used to annotate the quaternary structure, because the author assignment was not complete
PISA annotates this structure as Monomer, therefore the corresponding PDB chain was used as template structure
Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 49.265) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode
The target structure was calculated as SINGLE CHAIN
Template Selection
- Start SMR-Pipeline for:d934bf1c9aab2b1bc8cebf20773b71ef on BC2-cluster at Thu Feb 21 12:24:31
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with G found
- No template with E found
- No template with F found
- No template with H found
- Warning: Oligomer Prediction was not successfull!
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:5): model based on new templates
- Send 5 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ********
- building model based on 3g07D (978-1113) was successful
- ***
- building model based on 3g07C (817-864) was successful
- ****
- building model based on 3ou6C (788-863) was successful
- ****************
- building model based on 4htfA (821-1092) was not successful go to next best template
- ****************
- building model based on 4htfB (817-1094) was successful
- ****************
- building model based on 2igtC (780-1045) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:d934bf1c9aab2b1bc8cebf20773b71ef on BC2-cluster at Thu Feb 21 12:28:07
2013
Template Search
| Template Description |
|
||||||||||||||||||||||||||||||||||||||||
|
4hg2: THE STRUCTURE OF A PUTATIVE TYPE II METHYLTRANSFERASE FROMANAEROMYXOBACTER DEHALOGENANS. Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3hm2: CRYSTAL STRUCTURE OF PUTATIVE PRECORRIN-6Y C5,15- METHYLTRANSFERASE TARGETED DOMAIN FROM CORYNEBACTERIUM DIPHTHERIAE Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3ou2: DHPI-SAH COMPLEX STRUCTURE Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
4hc4: HUMAN HMT1 HNRNP METHYLTRANSFERASE-LIKE PROTEIN 6 (S. CERE Solved by: X-RAY, Resolution: 1.97A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3ou7: DHPI-SAM-HEP COMPLEX Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3ou6: DHPI-SAM COMPLEX Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
4htf: CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE-DEPENDENT METHYLFROM ESCHERICHIA COLI IN COMPLEX WITH S-ADENOSYLMETHIONIN Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
4a6e: CRYSTAL STRUCTURE OF HUMAN N-ACETYLSEROTONIN METHYLTRANSFE(ASMT) IN COMPLEX WITH SAM AND N-ACETYLSEROTONIN Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
4a6d: CRYSTAL STRUCTURE OF HUMAN N-ACETYLSEROTONIN METHYLTRANSFERASE (ASMT) IN COMPLEX WITH SAM Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
2igt: CRYSTAL STRUCTURE OF THE SAM DEPENDENT METHYLTRANSFERASE FROM AGROBACTERIUM TUMEFACIENS Solved by: X-RAY, Resolution: 1.89A, Identified by HHSEARCH |
|
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.