Template's ligands section Template without ligands. No ligands were included in the model.
Oligomer Modelling Log
Quaternary Structure Annotation of the Template 1kkd is annotated as MONOMER The template structure (1kkd) was solved by NMR and does not contain any quaternary structure annotation The template is annotated by the number of chains found in the PDB file
Quaternary Structure Modelling of the Target Protein The quaternary structure can be assumed to be identical Model was succesfully built as MONOMER.
Template Selection
- Start SMR-Pipeline for:99cfb40e411413cafbe78bbfa215289d on BC2-cluster at Mon Apr 29 01:12:43
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 1
- But still uncovered regions of the target sequence detected, go for: HHSEARCH
- No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modified template library
- Summarize templates:
- No template with R found
- No template with R found
- No template with R found
- No template with R found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with A found
- No template with B found
- No template with C found
- No template with D found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with R found
- No template with R found
- No template with R found
- No template with R found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with E found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with R found
- No template with R found
- No template with R found
- No template with R found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with C found
- No template with D found
- No template with L found
- No template with H found
- No template with L found
- No template with H found
- No template with L found
- No template with H found
- No template with L found
- No template with H found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- Warning: Oligomer Prediction was not successfull!
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:2): model based on new templates
- Send 2 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ********
- building model based on 1kkdA (746-837) was successful
- *******
- building model based on 3f7vC (667-748) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:99cfb40e411413cafbe78bbfa215289d on BC2-cluster at Mon Apr 29 01:14:15
2013
3fb8: KCSA POTASSIUM CHANNEL IN THE OPEN-CONDUCTIVE STATE WITH 2AT T112 IN THE PRESENCE OF RB+ ION Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
2hfe: RB+ COMPLEX OF A K CHANNEL WITH AN AMIDE TO ESTER SUBSTITUTION IN THE SELECTIVITY FILTER Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
2h8p: STRUCTURE OF A K CHANNEL WITH AN AMIDE TO ESTER SUBSTITUTION IN THE SELECTIVITY FILTER Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
2hg5: CS+ COMPLEX OF A K CHANNEL WITH AN AMIDE TO ESTER SUBSTITUTION IN THE SELECTIVITY FILTER Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
If you are using models from the SWISS-MODEL Repository, please
cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004) The SWISS-MODEL Repository of annotated
three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.