SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
|
|
|
|
|||||||||||||||||||||||||||||||
|
Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
|
Alignment
TARGET 1 FIDG KFVESKTNEW IDVHDPATNQ VVTRVPKATQ AEMQAALESN
4e4g_2#6 1 elgh--fidg krvagtsgrv snifnpatge vqgtvalasd adlaaavesa
TARGET sssss s sssss h hhhhhhhh
4e4g_2#6 s ss sss ss sssss s sssssss h hhhhhhhhhh
TARGET 45 KKAFRSWSNQ SILTRQQVMF KLQALIKENM GELAKNITKE QGKTLADAEG
4e4g_2#6 49 kaaqpkwaat npqrrarvfx kfvqllndnx nelaexlsre hgktiddakg
TARGET hhhhhhh hhhhhhhhh hhhhhhh hhhhhhhhhh h hhhhhh
4e4g_2#6 hhhhhhhh hhhhhhhhh hhh h hhhhhhhhhh h hhhhhh
TARGET 95 DVLRGLQVVE HCCSIPSLQM GETVANVARD MDTYSLVLPL GVTAGVAPFN
4e4g_2#6 99 divrglevce fvigiphlqk seftegagpg idxysirqpv gigagitpfn
TARGET hhhhhhhhhh hh hhh ssssss ssssssss sssssss
4e4g_2#6 hhhhhhhhhh hh hhh ssssss ssssssss sssssss
TARGET 145 FPAMIPLWMF PVAITTGNTM LLKPSERVPG ATMLLMELLN EAGCPPGVVN
4e4g_2#6 149 fpgxipxwxf apaiacgnaf ilkpserdps vpirlaelxi eaglpagiln
TARGET hhhhhhhh hhhhh ss sss h hhhhhhhhhh hh sss
4e4g_2#6 hhhhhhhh hhhhh ss sss h hhhhhhhhhh hh sss
TARGET 195 VIHGQHDAVN FICDAPEIKA VSFVGSDQAG KYIYERAGKN GKRVQSNMGA
4e4g_2#6 199 vvngdkgavd ailthpdiaa vsfvgstpia ryvygtaaxn gkraqcfgga
TARGET ss hhhh hhhh s sssss hhhh hhhhhhhhh ssssss
4e4g_2#6 ss hhhh hhhh s sssss hhhh hhhhhhhhh ssssss
TARGET 245 KNHGIILGDA NKENTLNQLA GAAFGAAGQR CMALSTAVFV GD--AQAWIP
4e4g_2#6 249 knhxiixpda dldqaanali gagygsager cxaisvavpv geetanrlid
TARGET ssssss hhhhhhhhh hhh ssss hhh
4e4g_2#6 ssssss hhhhhhhh hhh ssss hhhhhhhhh
TARGET 293 DLVERAQKLK VNAGHVPGTD VGPVISAASR QRINDLIESG VKEGAKLILD
4e4g_2#6 299 klvpxveslr igpytdekad xgpvvtkeae qrirslidsg ieqgaklvvd
TARGET hhhhhhh hhhh hhhhhhhhhh hhh sssss
4e4g_2#6 hhhhhhh hhhh hhhhhhhhhh hhh sssss
TARGET 343 GRKITVPGYE DGYFVGPTIL SDVTPSMKCY TEEIFGPVLV ILKADTLDDA
4e4g_2#6 349 grdfklqgye nghfiggclf ddvtpdxdiy kteifgpvls vvrarnyeea
TARGET s ssss s hhh h ssss ss hhhh
4e4g_2#6 s ssss s hhh h ssss ss hhhh
TARGET 393 IGIVNANPYG NGTAVFTTNG AAARKFVNEI DAGQVGVNVP IPVPLPMFSF
4e4g_2#6 399 lslpxkheyg ngvaiytrdg daardfasri nigxvgvnvp ipvplayhsf
TARGET hhhhhh ssssss hhhhhhhhh ssssss sss
4e4g_2#6 hhhhhh ssssss hhhhhhhhh ssssss sss
TARGET 443 TGTRGSFRGD HHFYGKQGIK FYTQTKTVTQ LW ------- ---- FIDGK
4e4g_2#6 449 ggwksssfgd lnqhgtdsik fwtrtktits rw-psgikye lgh--fidgk
*
TARGET sss sss hhhh h sssssss s
4e4g_2#6 sss sss hhhh h sssssss s ss s s ss s
TARGET 480 FVESKTNEWI DVHDPATNQV VTRVPKATQA EMQAALESNK KAFRSWSNQS
4e4g_2#6 10 rvagtsgrvs nifnpatgev qgtvalasda dlaaavesak aaqpkwaatn
TARGET sss ssss ss ssssss hh hhhhhhhhhh hhhhhh
4e4g_2#6 ss sss ss sssss hh hhhhhhhhhh hhhhhhh
TARGET 530 ILTRQQVMFK LQALIKENMG ELAKNITKEQ GKTLADAEGD VLRGLQVVEH
4e4g_2#6 60 pqrrarvfxk fvqllndnxn elaexlsreh gktiddakgd ivrglevcef
TARGET hhhhhhhhhh hhhhhh h hhhhhhh hhhhhhh hhhhhhhhh
4e4g_2#6 hhhhhhhhhh hhhhhh h hhhhhhh hhhhhhh hhhhhhhhh
TARGET 580 CCSIPSLQMG ETVANVARDM DTYSLVLPLG VTAGVAPFNF PAMIPLWMFP
4e4g_2#6 110 vigiphlqks eftegagpgi dxysirqpvg igagitpfnf pgxipxwxfa
TARGET hhhhh s sss sssssss s ssssss hhh h
4e4g_2#6 hhhhh s sss sssssss s ssssss hhhhhhh
TARGET 630 VAITTGNTML LKPSERVPGA TMLLMELLNE AGCPPGVVNV IHGQHDAVNF
4e4g_2#6 160 paiacgnafi lkpserdpsv pirlaelxie aglpagilnv vngdkgavda
TARGET hhhh sss ssss hh hhhhhhhhhh h ssss s hhhhhh
4e4g_2#6 hhhh sss ss h hhhhhhhhhh h ssss s hhhhhh
TARGET 680 ICDAPEIKAV SFVGSDQAGK YIYERAGKNG KRVQSNMGAK NHGIILGDAN
4e4g_2#6 210 ilthpdiaav sfvgstpiar yvygtaaxng kraqcfggak nhxiixpdad
TARGET hhh sss sss hhhhh hhh h sssss sssss
4e4g_2#6 hhh sss sss hhhhh hhh h sssss sssss
TARGET 730 KENTLNQLAG AAFGAAGQRC MALSTAVFVG DAQ--AWIPD LVERAQKLKV
4e4g_2#6 260 ldqaanalig agygsagerc xaisvavpvg eetanrlidk lvpxveslri
TARGET hhhhhhhhh ssssss hhh hhhhhh
4e4g_2#6 hhhhhhh ssssss hhhhhhhhh hhhhhh
TARGET 778 NAGHVPGTDV GPVISAASRQ RINDLIESGV KEGAKLILDG RKITVPGYED
4e4g_2#6 310 gpytdekadx gpvvtkeaeq rirslidsgi eqgaklvvdg rdfklqgyen
TARGET hhhhh hhhhhhhhhh h sss
4e4g_2#6 hhhhh hhhhhhhhhh h sss
TARGET 828 GYFVGPTILS DVTPSMKCYT EEIFGPVLVI LKADTLDDAI GIVNANPYGN
4e4g_2#6 360 ghfiggclfd dvtpdxdiyk teifgpvlsv vrarnyeeal slpxkheygn
TARGET ssss hhh sssss sss hhhhh hhhh s
4e4g_2#6 ssss hhh sssss sss hhhhh hhhh s
TARGET 878 GTAVFTTNGA AARKFVNEID AGQVGVNVPI PVPLPMFSFT GTRGSFRGDH
4e4g_2#6 410 gvaiytrdgd aardfasrin igxvgvnvpi pvplayhsfg gwksssfgdl
TARGET sssss h hhhhhhhh ssssss sss
4e4g_2#6 sssss h hhhhhhhh ssssss sss
TARGET 928 HFYGKQGIKF YTQTKTVTQL W -------- ----- FIDG KFVESKTNEW
4e4g_2#6 460 nqhgtdsikf wtrtktitsr w-psgikxxy elgh--fidg krvagtsgrv
*
TARGET sss hhhhh ssssssss
4e4g_2#6 sss hhhhh ssssssss s ss s ss sss
TARGET 963 IDVHDPATNQ VVTRVPKATQ AEMQAALESN KKAFRSWSNQ SILTRQQVMF
4e4g_2#6 19 snifnpatge vqgtvalasd adlaaavesa kaaqpkwaat npqrrarvfx
TARGET sssss s sssss h hhhhhhhhhh hhhhhhhh hhhhhhhhh
4e4g_2#6 sssss s ssssss h hhhhhhhhhh hhhhhhhh hhhhhhhhh
TARGET 1013 KLQALIKENM GELAKNITKE QGKTLADAEG DVLRGLQVVE HCCSIPSLQM
4e4g_2#6 69 kfvqllndnx nelaexlsre hgktiddakg divrglevce fvigiphlqk
TARGET hhhhhhh hhhhhhhhhh h hhhhhh hhhhhhhhhh hh hhh
4e4g_2#6 hhhhhhh hhhhhhhhhh h hhhhhh hhhhhhhhhh hh hhh
TARGET 1063 GETVANVARD MDTYSLVLPL GVTAGVAPFN FPAMIPLWMF PVAITTGNTM
4e4g_2#6 119 seftegagpg idxysirqpv gigagitpfn fpgxipxwxf apaiacgnaf
TARGET ssssss ssssssss sssss hhhhhh hhhhh ss
4e4g_2#6 ssssss ssssssss sssss hhhhhhhh hhhhh ss
TARGET 1113 LLKPSERVPG ATMLLMELLN EAGCPPGVVN VIHGQHDAVN FICDAPEIKA
4e4g_2#6 169 ilkpserdps vpirlaelxi eaglpagiln vvngdkgavd ailthpdiaa
TARGET sssss h hhhhhhhhhh hh sss ss hhhhh hhhh ss
4e4g_2#6 sssss h hhhhhhhhhh hh sss ss hhhhh hhhh ss
TARGET 1163 VSFVGSDQAG KYIYERAGKN GKRVQSNMGA KNHGIILGDA NKENTLNQLA
4e4g_2#6 219 vsfvgstpia ryvygtaaxn gkraqcfgga knhxiixpda dldqaanali
TARGET sssss hhhh hhhhhhhhh ssssss ssssss hhhhhhhhh
4e4g_2#6 sssss hhhh hhhhhhhhhh ssssss ssssss hhhhhhhhh
TARGET 1213 GAAFGAAGQR CMALSTAVFV GDA--QAWIP DLVERAQKLK VNAGHVPGTD
4e4g_2#6 269 gagygsager cxaisvavpv geetanrlid klvpxveslr igpytdekad
TARGET hhh ssssss hh hhhhhhhh
4e4g_2#6 hhh ssssss hhhhhhhhh hhhhhhhh
TARGET 1261 VGPVISAASR QRINDLIESG VKEGAKLILD GRKITVPGYE DGYFVGPTIL
4e4g_2#6 320 xgpvvtkeae qrirslidsg ieqgaklvvd grdfklqgye nghfiggclf
TARGET hhhh hhhhhhhhhh hh sss sss
4e4g_2#6 hhhh hhhhhhhhhh hh sssss s ssss
TARGET 1311 SDVTPSMKCY TEEIFGPVLV ILKADTLDDA IGIVNANPYG NGTAVFTTNG
4e4g_2#6 369 ddvtpdxdiy kteifgpvls vvrarnyeea lslpxkheyg ngvaiytrdg
TARGET s hhh h ssss ssss hhhh hhhhhh sss ssssss h
4e4g_2#6 s hhh h ssss ssss hhhh hhhhhh ssssss h
TARGET 1361 AAARKFVNEI DAGQVGVNVP IPVPLPMFSF TGTRGSFRGD HHFYGKQGIK
4e4g_2#6 419 daardfasri nigxvgvnvp ipvplayhsf ggwksssfgd lnqhgtdsik
TARGET hhhhhhhhh ssssss sss ssssss sss hhhh
4e4g_2#6 hhhhhhhhh ssssss sss sss sss hhhh
TARGET 1411 FYTQTKTVTQ LW ------- FIDGKFVES KTNEWIDVHD PATNQVVTRV
4e4g_2#6 469 fwtrtktits rw-pselgh- -fidgkrvag tsgrvsnifn patgevqgtv
*
TARGET h sssssss s sss sss
4e4g_2#6 h sssssss s sss sss
TARGET 1452 PKATQAEMQA ALESNKKAFR SWSNQSILTR QQVMFKLQAL IKENMGELAK
4e4g_2#6 34 alasdadlaa avesakaaqp kwaatnpqrr arvfxkfvql lndnxnelae
TARGET hhhhh hhhhh h hh hhhhh hhhhhhhhhh h hhhhhh
4e4g_2#6 hhhhh hhhhhh h hh hhhhh hhhhhhhhhh h hhhhhh
TARGET 1502 NITKEQGKTL ADAEGDVLRG LQVVEHCCSI PSLQMGETVA NVARDMDTYS
4e4g_2#6 85 xlsrehgkti ddakgdivrg levcefvigi phlqksefte gagpgidxys
TARGET hhhhhh h hhhhh hh hhhhhhh hhh sssss s sssss
4e4g_2#6 hhh h hhhhh hh hhhhhhh hhh sssss s sssss
TARGET 1552 LVLPLGVTAG VAPFNFPAMI PLWMFPVAIT TGNTMLLKPS ERVPGATMLL
4e4g_2#6 134 irqpvgigag itpfnfpgxi pxwxfapaia cgnafilkps erdpsvpirl
TARGET sss sss ss hh hhhhhhhhhh sssss hhhhhh
4e4g_2#6 sss sss ss hh hhhhhhhhhh sssss hhhhhh
TARGET 1602 MELLNEAGCP PGVVNVIHGQ HDAVNFICDA PEIKAVSFVG SDQAGKYIYE
4e4g_2#6 184 aelxieaglp agilnvvngd kgavdailth pdiaavsfvg stpiaryvyg
TARGET hhhhhh sssss hhhhhhhh sssssss hhhhhhhhh
4e4g_2#6 hhhhhh sssss hhhhhhhh sssss hhhhhhhhh
TARGET 1652 RAGKNGKRVQ SNMGAKNHGI ILGDANKENT LNQLAGAAFG AAGQRCMALS
4e4g_2#6 234 taaxngkraq cfggaknhxi ixpdadldqa analigagyg sagercxais
TARGET hhhhh sss sss ssss ss hhhh hhhhhhhh s
4e4g_2#6 hhhhh sss sss ssss ss hhhh hhhhhhhhh s
TARGET 1702 TAVFVGD--A QAWIPDLVER AQKLKVNAGH VPGTDVGPVI SAASRQRIND
4e4g_2#6 284 vavpvgeeta nrlidklvpx veslrigpyt dekadxgpvv tkeaeqrirs
TARGET sssss hhhhhhhhh hhhhhhhhh
4e4g_2#6 sssss hhh hhhhhhhhhh hhhhhhhhh
TARGET 1750 LIESGVKEGA KLILDGRKIT VPGYEDGYFV GPTILSDVTP SMKCYTEEIF
4e4g_2#6 334 lidsgieqga klvvdgrdfk lqgyenghfi ggclfddvtp dxdiykteif
TARGET hhhhhhh sss sssss hhhh
4e4g_2#6 hhhhhhh sss sssss hhhh
TARGET 1800 GPVLVILKAD TLDDAIGIVN ANPYGNGTAV FTTNGAAARK FVNEIDAGQV
4e4g_2#6 384 gpvlsvvrar nyeealslpx kheygngvai ytrdgdaard fasrinigxv
TARGET ssssssss hhhhhhhhh sss sss s hhhhhh hhhh sss
4e4g_2#6 ssssssss hhhhhhhhh sss sss s hhhhhh hhhh sss
TARGET 1850 GVNVPIPVPL PMFSFTGTRG SFRGDHHFYG KQGIKFYTQT KTVTQLW --
4e4g_2#6 434 gvnvpipvpl ayhsfggwks ssfgdlnqhg tdsikfwtrt ktitsrwpsg
TARGET sss sss sss hhhhh ss ssssss
4e4g_2#6 sss sss sss hhhhh ss ssssss
TARGET -
4e4g_2#6 484 i
TARGET
4e4g_2#6
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
4e4g is annotated as TETRAMER
PISA was used to annotate the quaternary structure, because the author assignment was not complete
The template was built based on the following PISA annotation file: 4e4g_assembly.xml.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=TETRAMER)
The corresponding reliability score is 0.896 (>0.5 indicates similarity)
To build the complex the following chains of the complex has been additionally identified: 4e4gE 4e4gH 4e4gF
Model was succesfully built as TETRAMER.
Template Selection
- Start SMR-Pipeline for:fa5e3b71de702f6d4acbc0db138c517d on BC2-cluster at Fri Feb 22 11:47:17
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with A found
- No template with C found
- No template with F found
- No template with J found
- No template with K found
- No template with L found
- No template with B found
- No template with D found
- No template with E found
- No template with G found
- No template with H found
- No template with I found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:3): model based on new templates
- Send 3 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *************************************************************************
- building model based on 4e4gG (29-502) was successful
- *********************************************************************
- building model based on 4f9iB (8-458) was not successful go to next best template
- *********************************************************************
- building model based on 4f9iA (8-458) was successful
- **************************************************************************
- building model based on 3rjlD (23-502) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:fa5e3b71de702f6d4acbc0db138c517d on BC2-cluster at Fri Feb 22 13:20:42
2013
Template Search
| Template Description |
|
||||||||||||||||||||||||||||||||||||||||
|
3rjl: CRYSTAL STRUCTURE OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENABACILLUS LICHENIFORMIS (TARGET NYSGRC-000337) Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3qan: CRYSTAL STRUCTURE OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENABACILLUS HALODURANS Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
3k9d: CRYSTAL STRUCTURE OF PROBABLE ALDEHYDE DEHYDROGENASE FROM LISTERIA MONOCYTOGENES EGD-E Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH |
|
||||||||||||||||||||||||||||||||||||||||
|
4ghk: X-RAY CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTBURKHOLDERIA THAILANDENSIS Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH |
|
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.