SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt Q7T3Q2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
VWC
VWC
VWC
VWC
VWC
VWC
Antistasin
Antistasin
Antistasin
Antistasin

Model 3D Structure
Model information:
Modelled residue range: 28 to 88
Based on template: [ 1wqj ]  
Sequence Identity [%]: 35%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    28      ALICLPCD K---SKCEEP KPCTGSVVLG ICGCCSVCAK QKNESCGGVY
1wqjB     3       aihcppcs eeklarcrpp vgceelvrep gcgccatcal glgmpcg-vy
                                                                      
TARGET                                    sssss      sssss            
1wqjB                      hhhhh          sssss      sssss     sss    


TARGET    73    GLYGTCDRGL RCVIRP --- ---------- -----                
1wqjB     50    --tprcgsgl rcypprgvek plhtlmhgqg vcmel                
                                                                      
TARGET                                                                
1wqjB                   ss sss        hhhhhhh  s sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2e62ca678dd18491fae1ac5f606d7923 on BC2-cluster at Fri Aug 29 15:50:20 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2e62ca678dd18491fae1ac5f606d7923
*******************************************************************************
>1skzA Evalue:2.6E-40 SeqID:31.193 Method:HHSEARCH Type:MODEL
-------------------------------------********----------------------------------
>1u5mA Evalue:4.7E-12 SeqID:30.435 Method:HHSEARCH Type:MODEL
--------------------------------------------------------------*****------------
>1u5mA Evalue:2.2E-10 SeqID:32.857 Method:HHSEARCH Type:MODEL
---------------------------------------------------******----------------------
>1wqjB Evalue:2.7E-08 SeqID:35.938 Method:HHSEARCH Type:MODEL
--*****------------------------------------------------------------------------
>3bk3C Evalue:2.8E-08 SeqID:28.814 Method:HHSEARCH Type:MODEL
------------------------------*****--------------------------------------------
>2iz3A Evalue:7.8E-06 SeqID:21.053 Method:HHSEARCH Type:MODEL
---------------------------------------------------------******----------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1skzA          481            588            HHSEARCH       NOT BUILT      
1u5mA          805            872            HHSEARCH       BUILT          
1u5mA          667            735            HHSEARCH       BUILT          
1wqjB          28             88             HHSEARCH       BUILT          
3bk3C          395            450            HHSEARCH       BUILT          
2iz3A          747            817            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2e62ca678dd18491fae1ac5f606d7923 on gopt-21.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 16:06:00 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.