SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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471

Sequence

UniProt

Q80VM3

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

TPR_12

Model 3D Structure

	Model information:
	Modelled residue range:	172 to 312
	Based on template:	[ 3sf4 ]
	Sequence Identity [%]:	34%
	Model date:	2013-02-22
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (3sf4): HETERO DIMER Model built :SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: none. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


                                                       
3sf4A     13    measclelal egerlcksgd cragvsffea avqvgtedlk tlsaiysqlg
                                                                      
                                                       
3sf4A               hhhhhh hhhhhhh    hhhhhhhhhh hhhh    hh hhhhhhhhhh


                                                       
3sf4A     63    nayfylhdya kaleyhhhdl tlartigdql geakasgnlg ntlkvlgnfd
                                                                      
                                                       
3sf4A           hhhh   hhh hhhhhhhhhh hhhh   hhh hhhhhhhhhh hhhh   hhh


                                                       
3sf4A     113   eaivccqrhl disrelndkv gearalynlg nvyhakgksf ggefpeevrd
                                                                      
                                                       
3sf4A           hhhhhhhhhh hhhh   hhh hhhhhhhhhh hhhhhhhh        hhhhh


                                                       
3sf4A     170   alqaavdfye enlslvtalg draaqgrafg nlgnthyllg nfrdaviahe
                                                                      
                                                       
3sf4A           hhhhhhhhhh hhhhhhh    hhhhhhhhhh hhhhhhhh    hhhhhhhhh


TARGET    1          LIKAD GGKKE--AEA ESHMGLLFEE EGELLKAAEH YEAFHELTHG
3sf4A     220   qrl--liake fgdkaaerra ysnlgnayif lgefetasey yk--ktllla
                                                                      
TARGET                hhhh h        h hhhhhhhhh    hhhhhh         hhhh
3sf4A           hhh  hhhh    hhhhhhhh hhhhhhhh       hhhhhh hh  hhhhhh


TARGET    44    RLWKDGTGQL LNLVACESLV RTYRLLSDRM LENKDYKQAI KILIKASEIA
3sf4A     266   rqlkd---ra veaqscyslg ntytll---- ---qdyekai dyhlkhlaia
                                                                      
TARGET          hhh      h hhhhhhhhhh hhhhh           hhhhh hhhhhhhhhh
3sf4A           h   h   hh hhhhhhhhhh hhhh           hhhhhh hhhhhhhhhh


TARGET    94    REGNDRSMEG EASYYLGLAH LASGEYETAL TVLNRYSEIS TSLDDDHG -
3sf4A     306   qelndrigeg racwslgnay talgnhdqam hfaekhleis revgdksgel
                                                                      
TARGET          h   hhhhhh hhhhhhhhhh hh   hhhhh hhhhhhhhhh hhh       
3sf4A           h   hhhhhh hhhhhhhhhh hh   hhhhh hhhhhhhhhh h   hhhhhh


TARGET          ---------- ---------                                  
3sf4A     356   tarlnlsdlq mvlglsyst                                  
                                                                      
TARGET                                                                
3sf4A           hhhhhhhhhh hhhhh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Template without ligands. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template
3sf4 is annotated as HETERO DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3sf4.pdb1.gz

Quaternary Structure Modelling of the Target Protein
3sf4_1

Template Selection

 - Start SMR-Pipeline for:978c6d6fe44b45226a93d57c1d525fe8 on BC2-cluster at Fri Feb 22 16:00:58
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with E found
 - No template with B found
 - No template with E found
 - No template with F found
 - No template with D found
 - Warning: Oligomer Prediction was not successfull!

 - Warning: clustersMergedFile not found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:9): model based on new templates
 - Send 9 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                              ************************
 - building model based on 3sf4B (172-312) was not successful go to next best template
 -                              ************************
 - building model based on 3sf4C (172-312) was not successful go to next best template
 -                              ************************
 - building model based on 3sf4A (172-312) was successful 
 -                                        **************************
 - building model based on 4a1sB (229-384) was successful 
 -                                **********************************
 - building model based on 3vtxA (182-384) was successful 
 -                         ************
 - building model based on 3vtxA (142-211) was successful 
 -                         *********************
 - building model based on 3vtxB (141-266) was successful 
 -                         **********************************
 - building model based on 3vtxA (143-345) was successful 
 -                                         *******************************
 - building model based on 3vtxA (234-417) was successful 
 -                                ****************************************
 - building model based on 4i17A (181-417) was successful 
 -                         *****************************************
 - building model based on 4i17A (141-384) was not successful go to next best template
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:978c6d6fe44b45226a93d57c1d525fe8 on BC2-cluster at Fri Feb 22 16:05:03
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

3vtx: CRYSTAL STRUCTURE OF MAMA PROTEIN
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

141-304	3vtxA	13%	>target ------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIS------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
141-169	3vtxA	0%	>target ------------------------------------------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNI-------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
141-265	3vtxA	18%	>target ----------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAR------------ >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
274-418	3vtxA	15%	>target -GEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES------------------------------------------------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
314-416	3vtxA	16%	>target -GRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI------------------------------------------------------------------------------------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
141-304	3vtxB	13%	>target ---------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIS------------ >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
141-213	3vtxB	18%	>target -----------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTH----------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
143-345	3vtxB	17%	>target -------LYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIAR----------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
182-384	3vtxB	21%	>target ----AEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA------------ >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------N-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
234-418	3vtxB	17%	>target ----VRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES-------------------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
274-417	3vtxB	15%	>target ----GEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIE------------------------------------------------------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
315-383	3vtxB	17%	>target -----RAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFST------------------------------------------------------------------------------------------------------------------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
354-383	3vtxB	17%	>target ----IRACTMLGDIYNEKGQYSKASEYFQQAFST----------------------------------------------------------------------------------------------------------------------------------------------------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
182-384	3vtxA	21%	>target -AEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------N-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
143-345	3vtxA	17%	>target ----LYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIAR------------ >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
234-417	3vtxA	17%	>target -VRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIE---------------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN------NVETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]
141-266	3vtxB	18%	>target -------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIARE---------- >3vtxB MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVP [Model]
142-211	3vtxA	19%	>target ---------------------------------------------------------------------------------------------------------NLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHEL-------------- >3vtxA TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELALVPR [Model]

4i17: CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BF2334) FROM FRAGILIS NCTC 9343 AT 1.50 A RESOLUTION
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

141-303	4i17A	14%	>target -------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEI------------------ >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK---------WKT-------DALYSLGVL-----FYNNGADVLRKATPLASSN------KE--KYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
141-266	4i17A	12%	>target ------------------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIARE--------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----K--KWKTDALYSLGVLF-----YNNGADVLRKATPLASSN------------------KEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
141-364	4i17A	10%	>target ---------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIY--- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA--T---------IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KWKTDALYSLGVLF-----YNNGADVLRKATPLAS------SNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSP------NRTEIKQMQDQVKAMI [Model]
236-384	4i17A	15%	>target -----TYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQ-SLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA-------------------------------------------------------------------------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
273-386	4i17A	9%	>target --EGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAME----------------------------------------------------------------------------------------------------------------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
314-385	4i17A	10%	>target ---GRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAM---------------------------------------------------------------------------------------------------------------------------------------------------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
141-384	4i17A	11%	>target ----NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDR-SMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA----------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KKWKTDALYSLGVLF-----YNNGADVLRKATPLASSN------KEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
181-417	4i17A	11%	>target --EAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLD-DDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIE-------------------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----------NQD-------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK----WKTDALYSLGVLF-----YNNGADVLRKATPLASS--NK------EKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]
188-212	4i17A	12%	>target --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGLLFEEEGELLKAAEHYEAFHELT----------------- >4i17A TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI [Model]

3vty: CRYSTAL STRUCTURE OF MAMA
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

141-304	3vtyA	13%	>target -------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIS------ >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-213	3vtyA	18%	>target ---------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTH----- >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-266	3vtyA	18%	>target -----------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIARE---- >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
142-347	3vtyA	17%	>target ----NLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNN--- >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
182-384	3vtyA	21%	>target --AEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA------ >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN------------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
234-418	3vtyA	17%	>target --VRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES-------------- >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
274-418	3vtyA	15%	>target --GEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES------------------------------------------------ >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
314-416	3vtyA	16%	>target --GRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI------------------------------------------------------------------------------------ >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
354-416	3vtyA	10%	>target --IRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI---------------------------------------------------------------------------------------------------------------------- >3vtyA ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-304	3vtyB	13%	>target -------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIS------ >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-213	3vtyB	18%	>target ---------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTH----- >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-266	3vtyB	18%	>target -----------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIARE---- >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
142-347	3vtyB	17%	>target ----NLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNN--- >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
182-384	3vtyB	21%	>target --AEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA------ >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN------------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
234-418	3vtyB	17%	>target --VRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES-------------- >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
274-418	3vtyB	15%	>target --GEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES------------------------------------------------ >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
314-416	3vtyB	16%	>target --GRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI------------------------------------------------------------------------------------ >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
354-416	3vtyB	10%	>target --IRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI---------------------------------------------------------------------------------------------------------------------- >3vtyB ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
140-304	3vtyC	13%	>target ------------------------------------YNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIS--------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
141-212	3vtyC	18%	>target ---------------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELT--------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
141-266	3vtyC	17%	>target -----------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIARE------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
142-346	3vtyC	17%	>target ----NLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARN------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
182-384	3vtyC	21%	>target --AEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA--------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------N-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
234-418	3vtyC	17%	>target --VRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES----------------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-----PG---FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
274-418	3vtyC	15%	>target --GEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES--------------------------------------------------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
314-383	3vtyC	17%	>target --GRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFST---------------------------------------------------------------------------------------------------------------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
354-383	3vtyC	17%	>target --IRACTMLGDIYNEKGQYSKASEYFQQAFST-------------------------------------------------------------------------------------------------------------------------------------------------- >3vtyC ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELA [Model]
141-305	3vtyD	13%	>target ---------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEIST----- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-213	3vtyD	18%	>target -----------------------------------------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTH----- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
141-267	3vtyD	17%	>target -------------------------------------------------------------------NNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREG--- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT--------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP------------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
143-347	3vtyD	17%	>target -LYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNN--- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
184-385	3vtyD	21%	>target AESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAM----- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-----------N-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
236-418	3vtyD	17%	>target TYRLLSDRMLENKDYKQAIKILIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES-------------- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-----PG---FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
277-418	3vtyD	15%	>target -SYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYIES------------------------------------------------ >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
317-416	3vtyD	16%	>target -YEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI------------------------------------------------------------------------------------ >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]
357-416	3vtyD	10%	>target -CTMLGDIYNEKGQYSKASEYFQQAFSTAMELMKTALMDETKVHYGIARAHQMMLAMKGYI---------------------------------------------------------------------------------------------------------------------- >3vtyD IYMDIGDKKRTKGDFDGAIRAYKKVLKADP--N------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.