SWISS-MODEL Repository - Model Details

Model Overview
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1
132

Sequence
UniProt Q86J23
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
MAPKK1_Int

Model 3D Structure
Model information:
Modelled residue range: 23 to 114
Based on template: [ 1sko ]  
Sequence Identity [%]: 31%
Model date: 2008-07-28
Revision date: 2008-07-28

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-28. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    23                            TSLILSDR DGFVLGKIID KSSSADNVID
1skoA     1     gsaddlkrfl ykklpsvegl --haivvsdr dgvpvik-va ndnapehalr
                                                                      
TARGET                                  sssssss    sss   ss s     hh  
1skoA            hhhhhhhhh hhhhh   ss   sssssss    sssss ss s        h


TARGET    51    NSLISTFSSA TDQASKLHAG NNKSIVSFFE DRIIVHINVS NVILSIITDT
1skoA     48    pgflstfala tdqgsklgls knksiicyyn tyqvvqfnrl plvvsfiass
                                                                      
TARGET           hhhhhhhhh hhhh         sssssss  sssssssss   sssssssss
1skoA           hhhhhhhhhh hhhh         sssssss  sssssssss   sssssssss


TARGET    101   ESNVGLILGS QDDL ----- --                              
1skoA     98    santglivsl ekelaplfee lr                              
                                                                      
TARGET              hhhhhh hhhh                                       
1skoA              hhhhhhh hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 371f71e52cb404f4b5f2df5184f966f7 on BC2-cluster at Mon Jul 28 04:21:37 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>371f71e52cb404f4b5f2df5184f966f7
******************************************************************
>1skoA Evalue:1.1E-21 SeqID:31.522 Method:HHSEARCH Type:MODEL
-----------**********************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1skoA          23             114            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 371f71e52cb404f4b5f2df5184f966f7 on gopt-76.cluster.bc2.ch BC2-Cluster at
Mon Jul 28 04:22:42 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.