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SWISS-MODEL Repository - Model Details

Model Overview

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374

Sequence

UniProt

Q8BIF2

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

Q8BIF2: 10090.ENSMUSP000

Domain

Link to: [ InterPro ]

	RRM_1
	Fox-1_C
	Fox-1_C

Model 3D Structure

	Model information:
	Modelled residue range:	95 to 178
	Based on template:	[ 2err ]
	Sequence Identity [%]:	94%
	Model date:	2013-02-23
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (2err): MONOMER Model: MONOMER

Ligand information:	[details]
Ligands in the template: A: 1, C: 1, G: 2, U: 3. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1           KQQP KRLHVSNIPF RFRDPDLRQM FGQFGKILDV EIIFNERGSK
2err_1#9  109   nten--ksqp krlhvsnipf rfrdpdlrqm fgqfgkildv eiifnergsk
                                                                      
TARGET                     sssssss       hhhhhhh hhhh    ss sss       
2err_1#9                   sssssss       hhhhhhh hhhh    ss sss       


TARGET    45    GFGFVTFETS SDADRAREKL NGTIVEGRKI EVNNATARVM           
2err_1#9  157   gfgfvtfens adadrarekl hgtvvegrki evnnatarvm -         
                                                                      
TARGET          sssssss    hhhhhhhhhh   sss  sss sss                  
2err_1#9        sssssss    hhhhhhhhhh   sss  sss sss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: A: 1, C: 1, G: 2, U: 3. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 2err is annotated as MONOMER 
 The template structure (2err) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER) 
 The corresponding reliability score is 0.85 (>0.5 indicates similarity) 
 Model was succesfully built as MONOMER.

Template Selection

 - Start SMR-Pipeline for:408d9e1bf36e6f8ce6410932acd169db on BC2-cluster at Fri Feb 22 23:57:56
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with C found
 - No template with F found
 - No template with B found
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                     ******************
 - building model based on 2errA (95-178) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:408d9e1bf36e6f8ce6410932acd169db on BC2-cluster at Sat Feb 23 00:35:12
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

2err: NMR STRUCTURE OF THE RNA BINDING DOMAIN OF HUMAN FOX-1 IN COMPLEX WITH UGCAUGU
Solved by: NMR, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

95-178

2errA

94%

2cq3: SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING MOTIF PROTEIN 9
Solved by: NMR, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

98-185

2cq3A

91%

1l3k: UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1
Solved by: X-RAY, Resolution: 1.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	95-176	1l3kA	30%	>target --KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATAR------------------------------------------------------------------------------ >1l3kA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL [Model]
	96-173	1l3kA	30%	>target -----------------------------------------------------------------------------------QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNA- >1l3kA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL [Model]

1ha1: HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	95-177	1ha1A	31%	>target -KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV---------------------------------------------------------------------------------- >1ha1A EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL [Model]
	96-173	1ha1A	30%	>target ---------------------------------------------------------------------------------------QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNA- >1ha1A EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL [Model]

1up1: UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	94-177	1up1A	31%	>target --EKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV----------------------------------------------------------------------------------- >1up1A PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSRGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS [Model]
	96-174	1up1A	30%	>target -----------------------------------------------------------------------------------------QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNAT- >1up1A PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALS [Model]

1u1m: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA 7GU GG); A HUMAN TELOMERIC REPEAT CONTAINING 7-DEAZA-GUANINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1mA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1mA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1mA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1mA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

2lyv: SOLUTION STRUCTURE OF THE TWO RRM DOMAINS OF HNRNP A1 (UP1SEGMENTAL ISOTOPE LABELING
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	96-177	2lyvA	31%	>target ----------QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV------------------------------------------------------------------------------------------------------- >2lyvA GSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR [Model]
	96-177	2lyvA	29%	>target -----------------------------------------------------------------------------------------------------QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV------------ >2lyvA GSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASASSSQRGR [Model]

2cpj: SOLUTION STRUCTURE OF THE N-TERMINAL RNA RECOGNITION MOTIFOF NONO
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

96-180

2cpjA

29%

1u1r: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(2PR) G); A HUMAN TELOMERIC REPEAT CONTAINING 2-AMINOPURINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1rA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1rA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1rA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1rA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1u1o: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(DI)G)A HUMAN TELOMERIC REPEAT CONTAINING INOSINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1oA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1oA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1oA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1oA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1u1k: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTT 7DA GGG); A HUMAN TELOMERIC REPEAT CONTAINING 7-DEAZA-ADENINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1kA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1kA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1kA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1kA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1u1p: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA 2PR GG); A HUMAN TELOMERIC REPEAT CONTAINING 2-AMINOPURINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1pA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1pA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1pA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1pA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1u1q: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA(DI)GG)A HUMAN TELOMERIC REPEAT CONTAINING INOSINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1qA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1qA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1qA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1qA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1pgz: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTAG(6-MI)G); A HUMAN TELOMERIC REPEAT CONTAINING 6-METHYL-8-(2- DEOXY-BETA-RIBOFURANOSYL)ISOXANTHOPTERIDINE (6-MI)
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1pgzA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1pgzA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1pgzA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1pgzA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1u1l: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTT PRN GGG); A HUMAN TELOMERIC REPEAT CONTAINING NEBULARINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1lA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1lA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1lA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1lA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

2up1: STRUCTURE OF UP1-TELOMERIC DNA COMPLEX
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	2up1A	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >2up1A KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	2up1A	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >2up1A KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

1po6: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TAGG(6MI)TTAGGG)A HUMAN TELOMERIC REPEAT CONTAINING 6-METHYL-8-(2-DEOXY- BETA-RIBOFURANOSYL)ISOXANTHOPTERIDINE (6MI)
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1po6A	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1po6A KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1po6A	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1po6A KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

2rs8: SOLUTION STRUCTURE OF THE N-TERMINAL RNA RECOGNITION MOTIF
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

96-180

2rs8A

29%

1u1n: CRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA (PRN) GG); A HUMAN TELOMERIC REPEAT CONTAINING NEBULARINE
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	99-175	1u1nA	30%	>target ------KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATA--------------------------------------------------------------------------------------------------- >1u1nA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS [Model]
	97-178	1u1nA	29%	>target -----------------------------------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM----- >1u1nA KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQEMASAS [Model]

2i38: SOLUTION STRUCTURE OF THE RRM OF SRP20
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	126-174	2i38A	18%	>target LDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTI-VEGRKIEVNNAT----------------------------------------------------------------------------------------------------- >2i38A MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGE-WTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRDLDGRTLCGCRVRVELSNGEKR [Model]
	97-176	2i38A	26%	>target -----------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATAR-- >2i38A MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRDLDGRTLCGCRVRVELSNGEKR [Model]

2i2y: SOLUTION STRUCTURE OF THE RRM OF SRP20 BOUND TO THE RNA CA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	126-173	2i2yA	16%	>target LDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTI-VEGRKIEVNNA------------------------------------------------------------------------------------------------------ >2i2yA MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGE-WTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR [Model]
	97-176	2i2yA	26%	>target -----------------------------------------------------------------------QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATAR-- >2i2yA MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.