SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | Q8CFG0 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
1p49A 23 aasrpniilv maddlgigdp gcygnktirt pnidrlasgg vkltqhlaas
1p49A sssss ss hhhh sss ssss
1p49A 73 pltpsraafm tgrypvrsgm aswsrtgvfl ftassgglpt deitfakllk
1p49A hhhhhhh h hhh hhhhhh
1p49A 124 dqgystalig kwhlgmschs ktdfchhplh hgfnyfygis ltnlrdckpg
1p49A h ssssss ss sssss
1p49A 174 egsvfttgfk rlvflplqiv gvtlltlaal nclgllhvpl gvffsllfla
1p49A hhhhhh h hhhhhh hhhhhhhhhh hhh hhhhhhhhhh
1p49A 224 aliltlflgf lhyfrplncf mmrnyeiiqq pmsydnltqr ltveaaqfiq
1p49A hhhhhhhhhh hhhhhhh ssss sssss hhhh hhhhhhhhhh
TARGET 1 VDDSMET
1p49A 274 rntetpfllv lsylhvhtal fsskdfagks qhgvygdave e--mdwsvgq
TARGET hhhhhh
1p49A sssss sss hhhhhhh h hhhhhhh
TARGET 8 IYDMLVETGE LDNTYILYTA DHGYH----- ------IGQF GLVKGK-SMP
1p49A 322 ilnlldelrl andtliyfts dqgahveevs skgeihggsn giykggkann
TARGET hhhhhhhh sss
1p49A hhhhhhhh ssssssss s sss sss
TARGET 46 YEFDIRVPFY VRGPNVE-AG SLNPHIVLNI DLAPTILDIA GLDIP--ADM
1p49A 372 weggirvpgi lrwprviqag qkideptsnm difptvakla gaplpedrii
TARGET hhh s ss h hhhhhhhhhh
1p49A sss ss ss sssh hhhhhhhhhh
TARGET 93 DGKSILKLLD --SERPVNRF --------- ---------- ----------
1p49A 422 dgrdlmplle gksqrsdhef lfhycnayln avrwhpqnst siwkaffftp
TARGET hhh
1p49A hhhhh ss sssss sss sssss ssssssss
TARGET ---------- ---------- ---------- ---------- ----------
1p49A 472 nfnpvcfath vcfcfgsyvt hhdppllfdi skdprernpl tpaseprfye
TARGET
1p49A s ss sssss hhh
TARGET ---------- ---------- ---------- ---------- ----------
1p49A 526 ilkvmqeaad rhtqtlpevp dqfswnnflw kpwlqlccps tglscqcdre
TARGET
1p49A hhhhhhh hhh sss
Template's ligands section
Ligands in the template:ALA : 1,CA : 1,NAG : 2,PO4 : 1.
Ligands in the template that will be assessed: CA600, NAG605, NAG606.
Model's ligands section
NAG605
One or more ligand's atoms are closer than 1.5 Angstroem to one or more atoms that belong to the model or to other ligands.
Given the properties calculated previously, the ligand A.NAG605 will not be included in the model.
NAG605: conservation:False, RMSD:False, included: False
NAG606
The ligand binds less than 3 template residues.
Given the properties calculated previously, the ligand A.NAG606 will not be included in the model.
NAG606: conservation:False, RMSD:False, included: False
CA600
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand CA600 will not be included in the final model.
CA600: conservation:False, RMSD:False, included: False
No ligands were included in the model.
Quaternary Structure Annotation of the Template
1p49 is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1p49.pdb1.gz
Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 32.283) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode
The target structure was calculated as SINGLE CHAIN
Template Selection
- Start SMR-Pipeline for:7e79f213f022efa9398aaa7446d2ef56 on BC2-cluster at Sun Feb 17 05:47:05
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with D found
- No template with C found
- No template with D found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:4): model based on new templates
- Send 4 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- **********
- building model based on 1p49A (290-399) was successful
- *****************************
- building model based on 2vqrA (75-395) was successful
- ********************************
- building model based on 1aukA (44-390) was not successful go to next best template
- ********************************
- building model based on 1e2sP (44-390) was not successful go to next best template
- ********************************
- building model based on 1e1zP (44-390) was not successful go to next best template
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- building model based on 1e33P (44-390) was not successful go to next best template
- ********************************
- building model based on 1n2kA (44-390) was not successful go to next best template
- ********************************
- building model based on 1n2lA (44-390) was not successful go to next best template
- ********************************
- building model based on 4fdiB (44-398) was successful
- ******
- building model based on 3ed4A (760-823) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:7e79f213f022efa9398aaa7446d2ef56 on BC2-cluster at Sun Feb 17 06:02:46
2013
Template Search
| Template Description |
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3ed4: CRYSTAL STRUCTURE OF PUTATIVE ARYLSULFATASE FROM ESCHERICHIA COLI Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH |
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4gty: CRYSTAL STRUCTURE OF MOUSE ENPP1 IN COMPLEX WITH GMP Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH |
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4gtw: CRYSTAL STRUCTURE OF MOUSE ENPP1 IN COMPLEX WITH AMP Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH |
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4gtz: CRYSTAL STRUCTURE OF MOUSE ENPP1 IN COMPLEX WITH CMP Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH |
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4gtx: CRYSTAL STRUCTURE OF MOUSE ENPP1 IN COMPLEX WITH TMP Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.