SWISS-MODEL Repository - Model Details

Model Overview
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1
332

Sequence
UniProt Q8GT95
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
LRRNT_2
LRR_4
LRR_4

Model 3D Structure
Model information:
Modelled residue range: 26 to 330
Based on template: [ 1ogq ]  
Sequence Identity [%]: 41%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    26       RCPPSDK QALMRVKQSL GNPATLSTWS LASAD--CCE WDHVRCD---
1ogqA     1     e--lcnpqdk qallqikkdl gnpttlsswl -pttdccnrt wlgvlcdtdt
                                                                      
TARGET                hhhh hhhhhhhhh                          sssss   
1ogqA                 hhhh hhhhhhhhh                          sssss   


TARGET    68    EAGRVNNVFI DGAND-VRGQ IPSAVAGLTA LMSLSLFRLP GLSGPIPACL
1ogqA     48    qtyrvnnldl sglnlpkpyp ipsslanlpy lnflyiggin nlvgpippai
                                                                      
TARGET             sssssss ss            hh       sssssss    sss    hh
1ogqA              sssssss ss            hh       sssssss    sss    hh


TARGET    117   TALSNLQFLT ISHTNVSGVI PDSLARIRSL DSVDLSHNSL TGPIPNSFSD
1ogqA     98    akltqlhyly ithtnvsgai pdflsqiktl vtldfsynal sgtlppsiss
                                                                      
TARGET          h     ssss sss ssss     hhh       ssssss ss ss    hhh 
1ogqA           h     ssss sss ssss     hhh       ssssss ss ss        


TARGET    167   LPNLRSLDLR SNKLTGCIPA GLVQGQ--FR SLILSYNQLT GPIPRDDAQD
1ogqA     148   lpnlvgitfd gnrisgaipd sygsfsklft smtisrnrlt gkipptfanl
                                                                      
TARGET              ssssss s ssss                ssssss sss s    hhh  
1ogqA               ssssss s ssss              s ssssss sss s    hhh  


TARGET    215   EINTVDLSHN RLTGDASFLF AAGRPIGKVD LSWNDLDFDL SKLVFPPELT
1ogqA     198   nlafvdlsrn mlegdasvlf gsdkntqkih laknslafdl gkvglsknln
                                                                      
TARGET            sssssss  ssss             ssss sss ssss            s
1ogqA             sssssss  ssss             ssss sss ssss            s


TARGET    265   YLDLSHNRIR GTVPRSLAAL STLQTLDLSY NRLCGPLPRL HGVIRHGCKP
1ogqA     248   gldlrnnriy gtlpqgltql kflhslnvsf nnlcgeipqg gnlqrfdvsa
                                                                      
TARGET          ssssss sss s    hhh       sssss   ssssss              
1ogqA           ssssss sss s    hhh       ssssss  ssssss      hh     s


TARGET    315   YEHNQCAGGA PLGGCH                                     
1ogqA     298   yannkclcgs plpact-                                    
                                                                      
TARGET               sss                                              
1ogqA           ss   sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: a11a34665cc7b8603b094ec6d1d1ed30 on BC2-cluster at Sun Aug 31 02:25:11 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>a11a34665cc7b8603b094ec6d1d1ed30
***********************************************************************************
>1ogqA Evalue:0 SeqID:41.853 Method:HHSEARCH Type:MODEL
------*****************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ogqA          26             330            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: a11a34665cc7b8603b094ec6d1d1ed30 on gopt-8.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 02:29:53 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.