SWISS-MODEL Repository - Model Details
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UniProt
Q8JZV7
Database: TrEMBL (Unreviewed)
Model information:
Modelled residue range:
54 to 403
Based on template:
[ 1yrr ]
Sequence Identity [%]:
34%
Model date:
2013-02-22
Revision date:
2013-01-30
Quaternary structure information:
[details]
Template (1yrr): TETRAMER Model built: SINGLE CHAIN
Ligand information:
[details]
Ligands in the template: GOL : 3, PO4 : 1. Ligands in the model: none.
Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in
[ AstexViewer ]
download model:
as [ pdb ]
- as [ Deepview project ]
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
TARGET 1 EQRDCGG
1yrrA 1 myaltqgrif tgheflddha vviadgliks vcpvaelppe i--eqrslng
TARGET
1yrrA ssss sss s sss sss ssss sssss ssss sssss
TARGET 8 RILAPGFIDV QINGGFGVDF SKATEDVG-S GVALVARRLL SHGVTSFCPT
1yrrA 49 ailspgfidv qlngcggvqf ndtaeavsve tleimqkane ksgctnylpt
TARGET ssssssss ssss sss hhhhhhhhh sssss
1yrrA sssssssss sss sss hh hhhhhhhhhh sssss
TARGET 57 LVTSPPEVYH KVLPQIPVKS GGPHGAGVLG VHLEGPFISR EKRGAHPEAY
1yrrA 99 littsdelmk qgv-rvmrey lakhpnqalg lhlegpwlnl vkkthnpn-f
TARGET sss hhhhh hhhh hhh ssss
1yrrA sss hhhhh hhh hhhhhh hhh ssss
TARGET 107 LRSFEANAFH DVLATYGPLD NVCIVTLAPE LDRSHEVIQA LTAQGIRVSL
1yrrA 148 vrkpda-alv dflcena--d vitkvtlape mvpa-evisk lanagivvsa
TARGET h hhhhhh sssss hhh hhh ssss
1yrrA hhhh hhh hhhhh sssss hhhhh hhh ssss
TARGET 157 GHSVADLRAA EVAVQSGATF ITHLFNAMLP FHHRDPGIVG LLTSDQLPPG
1yrrA 194 ghsnatlkea kagfragitf athlynampy itgrepglag aildea----
TARGET s hhhh hhhhhh ss s hhh hhhh
1yrrA s hhhh hhhhhh ss s hhh hhhh
TARGET 207 HCIFYGMIAD GIHTNPAALR IAHRAHPQGL VLVTDAVPAL GLGNGRHTLG
1yrrA 240 -diycgiiad glhvdyanir nakrlkgdkl clvtdatapa ganieqfifa
TARGET ssss hhhhh hhhhh ss sss sss sssss
1yrrA ssss hhhhh hhhhhh ss sss sssss
TARGET 257 QQEVE-VDGL IAYIAGTKTL GGSIAPMDVC VRHFLQATGC SVESALEAAS
1yrrA 289 gktiyyrngl cvdeng--tl sgssltmieg vrnlvehcgi aldevlrmat
TARGET ssss ss s sssss ssss s hhhh hhhhhh hhhhhh
1yrrA ssssss s sss ss s hhhh hhhhhh hhhhhh
TARGET 306 LHPAQMLGLE KTKGSLDFGA DADFVVLDDT LHVQATYI-S GELVWQ
1yrrA 337 lyparaigve krlgtlaagk vanltaftpd fkitktivng nevvtq-
TARGET hhhhhhh ssssss sssssss ssssss
1yrrA hhhhh hh hh s ssssssss ssssssss ssssss
Template's ligands section Ligands in the template: GOL : 3, PO4 : 1. The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. No ligands were included in the model.
Quaternary Structure Annotation of the Template 1yrr is annotated as TETRAMER The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry The following biological unit was used to build the template structure: 1yrr.pdb1.gz
Quaternary Structure Modelling of the Target Protein Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=TETRAMER) The target structure was calculated as SINGLE CHAIN The corresponding reliability score is 0.008 (>0.5 indicates similarity) To build the complex the following chains of the complex has been additionally identified: 1yrrB
- Start SMR-Pipeline for:6b3d970e9f5dc13fbc1cf8efc0ceb52c on BC2-cluster at Fri Feb 22 17:21:11
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with A found
- No template with D found
- No template with G found
- No template with J found
- No template with M found
- No template with P found
- No template with A found
- No template with D found
- No template with G found
- No template with J found
- No template with M found
- No template with P found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with D found
- No template with G found
- No template with J found
- No template with M found
- No template with P found
- No template with A found
- No template with D found
- No template with G found
- No template with J found
- No template with M found
- No template with P found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- No template with A found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:2): model based on new templates
- Send 2 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ********************************************************************
- building model based on 2vhlA (62-407) was not successful go to next best template
- ********************************************************************
- building model based on 2vhlB (62-407) was not successful go to next best template
- ********************************************************************
- building model based on 1yrrA (54-403) was successful
- ***************************************************************************
- building model based on 3iv8A (15-399) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:6b3d970e9f5dc13fbc1cf8efc0ceb52c on BC2-cluster at Fri Feb 22 17:27:21
2013
Template Description
1e9z: CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREASE Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
1e9y: CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREASE IN COMPLEXWITH ACETOHYDROXAMIC ACID Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
5-108
1e9yB
17%
>target
-----------------------------------------------------------QCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFF----------EERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>1e9yB
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFI------SPQ---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF
[Model]
3qgk: 3.0 A MODEL OF IRON CONTAINING UREASE UREA2B2 FROM HELICOBMUSTELAE (REFINED W/ NO ORDERED SOLVENT) Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
3-109
3qgkL
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkL
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgkO
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkO
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgkR
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkR
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgkC
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkC
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgkF
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkF
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgkI
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgkI
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3qga: 3.0 A MODEL OF IRON CONTAINING UREASE UREA2B2 FROM HELICOBMUSTELAE Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
3-109
3qgaO
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaO
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgaR
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaR
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgaC
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaC
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgaF
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaF
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgaI
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaI
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3-109
3qgaL
17%
>target
--------------------------------------------------------SGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLFFE----------ERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3qgaL
MKMKRQEYVNTYGPTTGDKVRLGDTDLWAEVEHDYTVYGEELKFGAGKTIREGMGQSNSPDENTLDLVITNALIIDYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGEGMIITAGGIDSHTHFLS------PQ---------QFPTALANGVTTMFGGGTGPVDGTNATTITPGVWNLHRMLRAAEEYGMNVGLLGKGNSSSRAQLVEQVKAGAIGFLHEDWGTTPSAIDHCLSVADEYDVQVCIHTDTVNEAGYVDDTLRAMNGRAIHAYHIEGAGGGHSPDVITMAGEVNILPSSTTPTIPYTINTVAEHLDMLMTCHHLDKRIRFSQSRIRPGSIAAEDTLHDMGVIAMTSSDSQAMGRAGEVIPRTWQTADKNKKEFGRLTEEKGDNDNFRIKRYISKYTINPAITHGVSEYIGSVEEGKIADLVVWNPAFFGVKPKIIIKGGMVVFSEMGDSNASVPTPQPVYYREMFGHHGKAKFDTSITFVSKVAYENGIKEKLGLERKVLPVKNCRNVTKKDFKFNNTTAKITVNPETFEVFVNGKLCTSKPATEVALASRYTFF
[Model]
3t81: CRYSTAL STRUCTURE OF DIIRON ADENINE DEAMINASE Solved by: X-RAY, Resolution: 2.63A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
8-406
3t81A
15%
>target
--------------------AGAPVLQFTNCRILR--GGTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIV---TLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3t81A
EPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAK---------------LRAGLTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIEV
[Model]
9-407
3t81B
16%
>target
----------------------GAPVLQFTNCRILR--GGTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIVT---LAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEEA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3t81B
AEPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAK-------------LRAG--LTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQTIDRPRFTQWGTEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIE
[Model]
3nqb: CRYSTAL STRUCTURE OF ADENINE DEAMINASE FROM AGROBACTERIUM (STR. C 58) Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
8-406
3nqbA
15%
>target
--------------------AGAPVLQFTNCRILR--GGTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIV---TLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3nqbA
EPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAK---------------LRAGLTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIEV
[Model]
8-407
3nqbB
15%
>target
---------------------AGAPVLQFTNCRILRG--GTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIV---TLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3nqbB
AEPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAKL---------------RAGLTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIE
[Model]
3t8l: CRYSTAL STRUCTURE OF ADENINE DEAMINASE WITH MN/FE Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
8-406
3t8lA
15%
>target
--------------------AGAPVLQFTNCRILR--GGTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIV---TLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3t8lA
EPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAK---------------LRAGLTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIEV
[Model]
8-407
3t8lB
15%
>target
---------------------AGAPVLQFTNCRILRG--GTLLREDLWVRGGRILDPEKLFFEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVTSFCPTLVT----SPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSFEANAFHDVLATYGPLDNVCIV---TLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVAVQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIAHRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGS---IAPMDVCVRHFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLD--DTLHVQATYISGELVWQAEEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>3t8lB
AEPADLNDDTLRARAVAAARGDQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPAS--RRDAAQVIDAGGAYVSPGLIDTHMHIESSMIT----------PAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN----L----PLRAILLAPSCVPSAPGLE--RGGADFDAAILADLLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMAAGVSSDHELVSGEDLMAKL---------------RAGLTIELRGSHDHLLPEFVAALNTLGH-----------------------------LPQTVTLCTDDVFPDDLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSD-LGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMISVTHRHGMAEPTTKTGFLTGWGRWNGAFATTVSHDSHNLTVFGGNAGDMALAANAVIGTGGGMAVASEGKVTAILPLPLSGLVSDAPLEEVARAFEDLREAVGKVVEWQPPYLVFKACFGATLACNIGPHQTDMGIADVLTGKVMESPVIE
[Model]
If you are using models from the
SWISS-MODEL Repository , please
cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res . 37 , D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated
three-dimensional protein structure homology models.
Nucleic Acids Res . 32 , D230-D234.