SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
336

Sequence
UniProt Q8K4F7
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DcpS
DcpS_C

Model 3D Structure
Model information:
Modelled residue range: 37 to 335
Based on template: [ 1st0 ]  
Sequence Identity [%]: 90%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    37      APVRLPFS GFRVQKVLRE SARDKIIFLH GKVNEDSGDT HGEDAVVILE
1st0A     38      apvrlpfs gfrlqkvlre sardkiiflh gkvneasgdg dgedavvile
                                                                      
TARGET                       ssssssss s   ssssss sss          ssssssss
1st0A                        ssssssss s   ssssss sss          ssssssss


TARGET    85    KTPFQVEHVA QLLTGNPELK LQFSNDIYST YNLFPPRHLS DIKTTVVYPA
1st0A     86    ktpfqveqva qlltgspelq lqfsndiyst yhlfpprqln dvkttvvypa
                                                                      
TARGET          s    hhhhh hhh    sss sssss  sss ssss         sssss   
1st0A           s    hhhhh hhh    sss sssss  sss ssss   hh    sssss   


TARGET    135   SEKHLQKYMR QDLRLIRETG DDYRSLTLPY LESQSLSIQW VYNILDKKAE
1st0A     136   tekhlqkylr qdlrliretg ddyrnitlph lesqslsiqw vynildkkae
                                                                      
TARGET           hhhhhhh    sssssss h hhhhh       hhh    hh hhhhhh    
1st0A            hhhhhhh    sssssss h hhhhh       hhh    hh hhhhhh    


TARGET    185   ADRIVFENPD PSDGFVLIPD LKWNQQQLDD LYLIAICHRR GIRSLRDLTP
1st0A     186   adrivfenpd psdgfvlipd lkwnqqqldd lyliaichrr girslrdltp
                                                                      
TARGET               sss      sssssss            ssssssss             
1st0A                sss      sssssss            ssssssss             


TARGET    235   EHLPLLRNIL REGQEAILKR YQVTGDRLRV YLHYLPSYYH LHVHFTALGF
1st0A     236   ehlpllrnil hqgqeailqr yrmkgdhlrv ylhylpsyyh lnvhftalgf
                                                                      
TARGET             hhhhhhh hhhhhhhhhh       ssss ssss         ssssss  
1st0A              hhhhhhh hhhhhhhhhh       ssss ssss         ssssss  


TARGET    285   EAPGSGVERA HLLAEVIENL ECDPKHYQRR TLTFALRTDD PLLQLLQKAQ
1st0A     286   eapgsgvera hllaevienl ecdprhyqqr tltfalradd pllkllqeaq
                                                                      
TARGET                  ss ssshhhhhhh hh      h   sssssss    hhhhhhhh 
1st0A                   ss ssshhhhhhh hh   hhhh   sssssss    hhhhhhhh 


TARGET    335   Q                                                     
1st0A     336   qs                                                    
                                                                      
TARGET                                                                
1st0A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: bd754f90371125455011d4dd807fe7ca on BC2-cluster at Sat Aug 30 02:16:36 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>bd754f90371125455011d4dd807fe7ca
************************************************************************************
>1st0A Evalue:1.65908e-153 SeqID:90.301 Method:BLAST Type:MODEL
---------***************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1st0A          37             335            BLAST          BUILT          

FINISHED PIPELINE ON ID: bd754f90371125455011d4dd807fe7ca on gopt-52.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:17:39 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.