SWISS-MODEL Repository - Model Details

Model Overview
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1
202

Sequence
UniProt Q8KT78
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Peptidase_S24
LexA_DNA_bind

Model 3D Structure
Model information:
Modelled residue range: 4 to 201
Based on template: [ 1jhh ]  
Sequence Identity [%]: 63%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4         LTPRQA EILAFIKRCL EDNGYPPTRA EIAQELGFKS PNAAEEHLKA
1jhhA     2     ka--ltarqq evfdlirdhi sqtgmpptra eiaqrlgfrs pnaaeehlka
                                                                      
TARGET                hhhh hhhhhhhhhh hh      hh hhhhhh      hhhhhhhhh
1jhhA                 hhhh hhhhhhhhhh hh      hh hhhhhh      hhhhhhhhh


TARGET    50    LARKGAIEMT PGASRGIRIP GFEAKPDDSS LPIIGRVAAG APILAEQHIE
1jhhA     50    larkgvieiv sgasrgirl- ---lqeeeeg lplvgrvaag epllaqqhie
                                                                      
TARGET          hhhh   sss      sss              sssss             sss
1jhhA           hhhh sssss      ssss     s       sssss             sss


TARGET    100   ESCNINPAFF HPRADYLLRV HGMSMKDIGI FDGDLLAVHT TREARNGQVV
1jhhA     96    ghyqvdpslf kpnadfllrv sgmamkdigi mdgdllavhk tqdvrngqvv
                                                                      
TARGET          sss             sssss               ssssss         sss
1jhhA           sss             sssss               ssssss         sss


TARGET    150   VARIGDEVTV KRFKREGSKV WLIAENPEFA PIEVNLKDQD LVIEGLSVGV
1jhhA     146   variddevtv krlkkqgnkv ellpensefk pivvdlrqqs ftieglavgv
                                                                      
TARGET          sssss ssss ssssss sss sss         sssss   s ssssssssss
1jhhA           sssss ssss ssssss sss sss         sssss   s ssssssssss


TARGET    200   IR                                                    
1jhhA     196   irn                                                   
                                                                      
TARGET          s                                                     
1jhhA           s

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 9fdec3bc44a400e92639ad2f05e85eca on BC2-cluster at Sat Aug 30 16:09:17 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>9fdec3bc44a400e92639ad2f05e85eca
********************************************************************
>1jhhA Evalue:1.44878e-64 SeqID:63.131 Method:BLAST Type:MODEL
-**********************-*******************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1jhhA          4              201            BLAST          BUILT          

FINISHED PIPELINE ON ID: 9fdec3bc44a400e92639ad2f05e85eca on gopt-52.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 16:09:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.