SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | Q8W1L6 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2008-08-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 277 SPTSKALV HAFFAQRLTT KVPG---VTD VQLKPRKIRK VAVIGGGLMG
1zcjA 261 sgqakalq yaffaeksan kwstpsgasw ktasaqpvss vgvlglgtmg
TARGET hhhhhhh hh hhhh ss sssss hhh
1zcjA hhhhhhh hh hhhh sss sss ss sssss hhh
TARGET 322 SGIATALLVS NTSVVLKEVN PQFLQRGQKM IAANLEGLVK RGSLTKDKMN
1zcjA 309 rgiaisfarv gisvvavesd pkqldaakki itftlekeas rahqngq--a
TARGET hhhhhhhh ssssss hhhhhhhhhh hhhhhhhhhh hhhhh
1zcjA hhhhhhhh ssssss hhhhhhhhhh hhhhhhhhhh hhhhh
TARGET 372 KAMSLLKGAL DYSDFKDVDM VIEAVIEKIP LKQSIFSDLE KVCPPHCILA
1zcjA 357 sakpklrfss stkelstvdl vveavfedmn lkkkvfaels alckpgaflc
TARGET sssss ss ssss hh hhhhhhhhhh hh sss
1zcjA sssss ss ssss hh hhhhhhhhhh hh sss
TARGET 422 TNTSTIDLNV VGEKTNSQDR IIGAHFFSPA HIMPLLEIVR TEKTSPQAIL
1zcjA 407 tntsalnvdd iasstdrpql vigthffspa hvmrllevip srysspttia
TARGET ss hh hhh s sssssssss sssssss hhhhh
1zcjA ss hh hhh s sssssssss sssssss hhhhh
TARGET 472 DLITVGKMIK KVPVVVGNCT GFAVNRTFFP YTQGSHLLVS IGIDVFRIDR
1zcjA 457 tvmslskkig kigvvvgncy gfvgnrmlap yynqgfflle egskpedvdg
TARGET hhhhhhhh sssss hhhhhhh hhhhhhhhhh h hhhhhh
1zcjA hhhhhhhhh sssss hhhhhhh hhhhhhhhhh h hhhhhh
TARGET 522 VISSFGMPMG PFQLQDLAGY GVALAVKDIY AAAFGTR--- --------NL
1zcjA 507 vleefgfkmg pfrvsdlagl dvgwkirkgq gltgpslppg tpvrkrgnsr
TARGET hhhhh hhhhhhh hhhhhhhhhh
1zcjA hhhhh hhhhhhh hhhhhhhhhh sss ss
TARGET 561 DSNLVDLMVQ NGRQGKSNGK GYYLYEKGGK --PKPDPSVQ VVIDEYRRCA
1zcjA 557 ysplgdmlce agrfgqktgk gwyqydkplg rihkpdpwls tflsqyrevh
TARGET hhhhhhh h ss s sss hhh hhhhhhhhhh
1zcjA s hhhhhhh h ss s ssssss s ssss hhh hhhhhhhhhh
TARGET 609 KTMPGGKPVT LSDQDILEMI FFPVVNEACR VMDENVVIRA SDLDIASILG
1zcjA 607 hie----qrt iskeeilerc lyslineafr ileegmaarp ehidviylhg
TARGET hhhhhhhh hhhhhhhhhh hhhh hhhhhhhhhh
1zcjA hhhhhhhh hhhhhhhhhh hhhh hhhhhhhhhh
TARGET 659 MGFPKFRGGL VFWADTIGAP YIHSKLSKWT EIYGDFF--K PSSYLEDRAK
1zcjA 653 ygwprhkggp mfyaasvglp tvleklqkyy rqnpdipqle psdylrrlva
TARGET h hhhhhh h hhhhhhhhhh hh hhhhhhhh
1zcjA h hhhhhh h hhhhhhhhhh hh hhhhhhhh
TARGET 707 RS ------- -------
1zcjA 703 qgspplkewq slagphg
TARGET h
1zcjA h h h hh
no data available!
no data available!
Template Selection
START PIPELINE ON ID: f00cf8844ee1c5a9d272315ca2d82f36 on BC2-cluster at Sat Aug 30 20:40:47 2008 NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH ############# TEMPLATES SELECTED ############# >f00cf8844ee1c5a9d272315ca2d82f36 ********************************************************************************* >1zcjA Evalue:0 SeqID:31.778 Method:HHSEARCH Type:MODEL -------------------------------************************************************-- >1wdkA Evalue:0 SeqID:29.395 Method:HHSEARCH Type:MODEL -******************************************************************-***********-- TEMPLATE ID START STOP METHOD STATUS 1zcjA 277 708 HHSEARCH BUILT 1wdkA 9 707 HHSEARCH BUILT FINISHED PIPELINE ON ID: f00cf8844ee1c5a9d272315ca2d82f36 on gopt-47.cluster.bc2.ch BC2-Cluster at Sat Aug 30 20:51:29 2008
Template Search
| Template Description |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.