SWISS-MODEL Repository - Model Details

Model Overview
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1
203

Sequence
UniProt Q941Y8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
FMN_red

Model 3D Structure
Model information:
Modelled residue range: 9 to 197
Based on template: [ 2fzv ]  
Sequence Identity [%]: 22%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    9                                             ALR VAAISGSLRR
2fzvA     65535  namrlrhlsd pdslpaldks faierpalgl apdap--pvr illlygslra
                                                                      
TARGET                                                   ss ssssss    
2fzvA              sss                                   ss ssssss    


TARGET    22    GSANTGLIRA AKEICEESIP GMVIDHVDIP DLPLLNTDME VDDGFPPAVE
2fzvA     47    rsfsrlavee aarllqf--f gaetrifdps dlplpd-qvq sd-d-hpavk
                                                                      
TARGET            hhhhhhhh hhhhhh       sssss                     hhhh
2fzvA             hhhhhhhh hhhhhhh  h   ssssss                    hhhh


TARGET    72    AFRASVRAAD CFLFASPEYN YSISGPLKNA LDWGSRP--- PNCWADRAAA
2fzvA     92    elralsewse gqvwcsperh gqitsvmkaq idhlplemag irptqgrtla
                                                                      
TARGET          hhhhhhhh s ssssssss       hhhhhh hh               ssss
2fzvA           hhhhhhhh s ssssssss       hhhhhh hh               ssss


TARGET    119   IVSASGGSGG SRSMYHIRQV GVFLDIHFIN KPEVFIKAHQ PPKKFDSDGN
2fzvA     142   vmqvsggsqs fnavntlrll grwmrmftip nqssiakafq ---efdaagr
                                                                      
TARGET          sssss       hhhhhhhhh hhhh  sss    ssssssss  sssss   s
2fzvA           sssss       hhhhhhhhh hhhh  sss    sssss hh           


TARGET    169   LIDPEIKEEL KDMLLSLQAF ALRLQGKPA  ---------- -----     
2fzvA     189   mkpspyydri advmeelvrf talvrphrea ltdryserka aghvi     
                                                                      
TARGET          ss  hhhhhh hhhhhhhhhh hhhhh                           
2fzvA               hhhhhh hhhhhhhhhh hhhh   hhh    hhhhhhh h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2883fab1105be4165b3cf5f472049473 on BC2-cluster at Sun Aug 31 05:05:04 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2883fab1105be4165b3cf5f472049473
********************************************************************
>2fzvA Evalue:1.8E-43 SeqID:22.396 Method:HHSEARCH Type:MODEL
---******************-*******************************-************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
2fzvA          9              197            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2883fab1105be4165b3cf5f472049473 on gopt-33.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 05:07:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.