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SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
Alignment
TARGET 1 RCAILWHE QWHDALDDAS RVYFHRRLQD NNVQAMFDAL RNMNDLMQKG
1fapB 2018 rvailwhe mwhegleeas rlyfger--- -nvkgmfevl eplhammerg
TARGET hhh hhhhhhhhhh hhhh hhhhh hhhhhhhh
1fapB hhh hhhhhhhhhh hhhh hhhhh hhhhhhhhh
TARGET 49 APTTMKEHSF QQTYSSDLKE AGRYVQAFES SGNVKDLNQA WEIYCSVFKK
1fapB 2062 -pqtlketsf nqaygrdlme aqewcrkymk sgnvkdltqa wdlyyhvfrr
TARGET hhhhhh hh hhhhh hhhhhhhhhh hhhhhh hhhhhhhhhh
1fapB hhhhhh hh hhhhh hhhhhhhhhh hhhhh hhhhhhhhhh
TARGET 99 L
1fapB 2111 is
TARGET
1fapB
Template Selection
- Start SMR-Pipeline for:3be492797e171a4bfe7a8aeb7d5c7dec on BC2-cluster at Wed Feb 20 22:38:39
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with A found
- No template with B found
- No template with A found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with B found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with C found
- No template with B found
- No template with A found
- No template with A found
- Warning: Oligomer Prediction was not successfull!
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:22): model based on new templates
- Send 22 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ***
- building model based on 1fapB (2189-2287) was successful
- **
- building model based on 4fhjA (2474-2557) was successful
- *******
- building model based on 2y3aA (2322-2565) was successful
- *
- building model based on 4b8pB (820-848) was successful
- *
- building model based on 4hxtA (695-722) was successful
- *
- building model based on 4hxtA (866-892) was successful
- *
- building model based on 3vtyA (1516-1542) was successful
- **
- building model based on 4hxtA (822-891) was successful
- ****
- building model based on 4hxtA (746-892) was successful
- *
- building model based on 3vtyA (1439-1464) was successful
- *
- building model based on 3vtxB (1645-1670) was successful
- *
- building model based on 3vtyD (1907-1932) was successful
- ******
- building model based on 4hxtA (694-895) was successful
- **
- building model based on 3vtxB (1752-1821) was successful
- *******
- building model based on 4hxtA (656-892) was successful
- *
- building model based on 4hxtA (217-265) was successful
- *******
- building model based on 4hxtA (606-850) was successful
- *********
- building model based on 4b8jA (608-897) was successful
- ************
- building model based on 4b8pB (607-1001) was successful
- **
- building model based on 4b8pB (1118-1184) was successful
- ***
- building model based on 3vtyD (1438-1540) was successful
- ******
- building model based on 3vtyD (1484-1671) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:3be492797e171a4bfe7a8aeb7d5c7dec on BC2-cluster at Wed Feb 20 22:47:09
2013
Template Search
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles: - Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009). The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37, D387-D392. - Jürgen Kopp and Torsten Schwede (2004) The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res. 32, D230-D234. |
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