SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] |
Alignment
TARGET 1 TKGLVLGI YAKDKDDDLP QFTSAGESFN KLVSGKLREM LNISGPPLKA
1lam_1#3 1 tkglvlgi yskekeedep qftsagenfn klvsgklrei lnisgpplka
TARGET ssssss s ssshhhhhhh hh hhhhh hhh
1lam_1#3 ssssss s ssshhhhhhh hh hhhhh hhh
TARGET 49 GKTRTFYGLH QDFPSVVVVG LGKRSAGVDD QENWHEGKEN IRAAVAAGCR
1lam_1#3 49 gktrtfyglh edfpsvvvvg lgkktagide qenwhegken iraavaagcr
TARGET sssssssss sssssssss s hhhhh hhhhhhhhhh
1lam_1#3 sssssssss sssssssss s hhhhh hhhhhhhhhh
TARGET 99 QVQDLELPSV EVDPCGDAQA AAEGAVLGLY EYDDLKQKKK VAVSAKLHGS
1lam_1#3 99 qiqdleipsv evdpcgdaqa aaegavlgly eyddlkqkrk vvvsaklhgs
TARGET hhhh sss sss hhh hhhhhhhh sssss
1lam_1#3 hhhh sss sss hhh hhhhhhhh sssss
TARGET 149 GDLEAWEKGV LFASGQNLAR HLMESPANEM TPTRFAEIIE KNLKSASSKT
1lam_1#3 149 edqeawqrgv lfasgqnlar rlmetpanem tptkfaeive enlksasikt
TARGET hhhhhhhh hhhhhhhhhh hhhh hhhhhhhhh hhhhhh ss
1lam_1#3 hhhhhhhh hhhhhhhhhh hhhh hhhhhhhhh hhhhhh ss
TARGET 199 KVHIRPKSWI EEQEMGSFLS VAKGSEEPPV FLEIHYMGSP NATEAPLVFV
1lam_1#3 199 dvfirpkswi eeqemgsfls vakgseeppv fleihykgsp nasepplvfv
TARGET sssss hhhh h hhhhhh hhh s ssssssss ssss
1lam_1#3 sssss hhhh h hhhhhh hhh s ssssssss ssss
TARGET 249 GKGITFDSGG ISIKASANMD LMRADMGGAA TICSAIVSAA KLNLPINIIG
1lam_1#3 249 gkgitfdsgg isikaaanmd lmradmggaa ticsaivsaa kldlpinivg
TARGET sssss sss sss h hh hhhh hhhhhhhhhh hh sssss
1lam_1#3 sssss sss sss h hh hhhh hhhhhhhhhh hh sssss
TARGET 299 LAPLCENMPS GKANKPGDVV RARNGKTIQV DNTDAEGRLI LADALCYAHT
1lam_1#3 299 laplcenmps gkankpgdvv rarngktiqv dntdaegrli ladalcyaht
TARGET sssss sss ss sssss hhhh hhhhhhhhhh
1lam_1#3 sssss sss ss sssss hhhh hhhhhhhhhh
TARGET 349 FNPKVIINAA TLTGAMDVAL GSGATGVFTN SSWLWNKLFE ASVETGDRVW
1lam_1#3 349 fnpkviinaa tltgamdial gsgatgvftn sswlwnklfe asietgdrvw
TARGET ssssss hhhhh ssss hhhhhhhhh hhhhh sss
1lam_1#3 ssssss hhhhh ssss hhhhhhhhh hhhhh sss
TARGET 399 RMPLFEHYTR QVIDCQLADV NNLGKYRSAG ACTAAAFLRE FVTHTKWAHL
1lam_1#3 399 rmplfehytr qvidcqladv nnigkyrsag actaaaflke fvthpkwahl
TARGET ss hhhh hhh s ss h hhhhhhhhh sssss
1lam_1#3 ss hhhh hhh s ss h hhhhhhhhh sssss
TARGET 449 DIAGVMTNKD EIPYLRKGMS GRPTRTLIEF LLRFSK - T KGLVLGIYAK
1lam_1#3 449 diagvmtnkd evpylrkgma grptrtlief lfrfsq---t kglvlgiysk
*
TARGET ss sss sss hhhhhhh hhhhhh sssssss
1lam_1#3 ss sss sss hhhhhhh hhhhh sssssss
TARGET 496 DKDDDLPQFT SAGESFNKLV SGKLREMLNI SGPPLKAGKT RTFYGLHQDF
1lam_1#3 12 ekeedepqft sagenfnklv sgklreilni sgpplkagkt rtfyglhedf
TARGET sss hhhhhhhhh hhhhhhhh ss sssssss ss
1lam_1#3 sss hhhhhhhhh hhhhhhhh ss sssssss ss
TARGET 546 PSVVVVGLGK RSAGVDDQEN WHEGKENIRA AVAAGCRQVQ DLELPSVEVD
1lam_1#3 62 psvvvvglgk ktagideqen whegkenira avaagcrqiq dleipsvevd
TARGET ssssssss hhhhhhhh hhhhhhhhhh h ssssss
1lam_1#3 ssssssss hhhhhhhh hhhhhhhhhh h ssssss
TARGET 596 PCGDAQAAAE GAVLGLYEYD DLKQKKKVAV SAKLHGSGDL EAWEKGVLFA
1lam_1#3 112 pcgdaqaaae gavlglyeyd dlkqkrkvvv saklhgsedq eawqrgvlfa
TARGET hhhhhh hhhhh sssss h hhhhhhhhhh
1lam_1#3 hhhhhh hhhhh sssss h hhhhhhhhhh
TARGET 646 SGQNLARHLM ESPANEMTPT RFAEIIEKNL KSASSKTKVH IRPKSWIEEQ
1lam_1#3 162 sgqnlarrlm etpanemtpt kfaeiveenl ksasiktdvf irpkswieeq
TARGET hhhhhhhhhh h hh hhhhhhhhhh hhh sssss ss hhhhh
1lam_1#3 hhhhhhhhhh h hh hhhhhhhhhh hhh sssss ss hhhhh
TARGET 696 EMGSFLSVAK GSEEPPVFLE IHYMGSPNAT EAPLVFVGKG ITFDSGGISI
1lam_1#3 212 emgsflsvak gseeppvfle ihykgspnas epplvfvgkg itfdsggisi
TARGET hhhhhhhhh ssss sssss sssssss ss sss ss
1lam_1#3 hhhhhhhhh ssss sssss sssssss ss sss ss
TARGET 746 KASANMDLMR ADMGGAATIC SAIVSAAKLN LPINIIGLAP LCENMPSGKA
1lam_1#3 262 kaaanmdlmr admggaatic saivsaakld lpinivglap lcenmpsgka
TARGET s hhh hhhhhhh hhhhhhhhh ssssssss ss
1lam_1#3 s hhh hhhhhhh hhhhhhhhh ssssssss ss
TARGET 796 NKPGDVVRAR NGKTIQVDNT DAEGRLILAD ALCYAHTFNP KVIINAATLT
1lam_1#3 312 nkpgdvvrar ngktiqvdnt daegrlilad alcyahtfnp kviinaatlt
TARGET sssss sssss hhhhhhh hhhhhhh ssssss
1lam_1#3 sssss sssss hhhhhhh hhhhhhh ssssss
TARGET 846 GAMDVALGSG ATGVFTNSSW LWNKLFEASV ETGDRVWRMP LFEHYTRQVI
1lam_1#3 362 gamdialgsg atgvftnssw lwnklfeasi etgdrvwrmp lfehytrqvi
TARGET hhhhh ssss hh hhhhhhhhhh hh sssss hhhhhhh
1lam_1#3 hhhhh ssss hh hhhhhhhhhh hh sssss hhhhhhh
TARGET 896 DCQLADVNNL GKYRSAGACT AAAFLREFVT HTKWAHLDIA GVMTNKDEIP
1lam_1#3 412 dcqladvnni gkyrsagact aaaflkefvt hpkwahldia gvmtnkdevp
TARGET sss hhhh hhhhhh sssssss sss
1lam_1#3 sss hhhh hhhhhh sssssss sss
TARGET 946 YLRKGMSGRP TRTLIEFLLR FSK - TKGL VLGIYAKDKD DDLPQFTSAG
1lam_1#3 462 ylrkgmagrp trtlieflfr fsq---tkgl vlgiyskeke edepqftsag
*
TARGET sss hhhhhhhhhh hhh ss sssss ssshhh
1lam_1#3 sss hhhhhhhhhh hh ss sssss ssshhh
TARGET 993 ESFNKLVSGK LREMLNISGP PLKAGKTRTF YGLHQDFPSV VVVGLGKRSA
1lam_1#3 25 enfnklvsgk lreilnisgp plkagktrtf yglhedfpsv vvvglgkkta
TARGET hhhhhh h hhhhhhh sssss ssss sssss sssss
1lam_1#3 hhhhhh h hhhhhhh sssss ssss sssss sssss
TARGET 1043 GVDDQENWHE GKENIRAAVA AGCRQVQDLE LPSVEVDPCG DAQAAAEGAV
1lam_1#3 75 gideqenwhe gkeniraava agcrqiqdle ipsvevdpcg daqaaaegav
TARGET h hhhhhhhhhh hhhhhhhh ssssss hhhhhhhhh
1lam_1#3 h hhhhhhhhhh hhhhhhhh ssssss hhhhhhhhh
TARGET 1093 LGLYEYDDLK QKKKVAVSAK LHGSGDLEAW EKGVLFASGQ NLARHLMESP
1lam_1#3 125 lglyeyddlk qkrkvvvsak lhgsedqeaw qrgvlfasgq nlarrlmetp
TARGET hh sss ss hhhh hhhhhhhhhh hhhhhhhh
1lam_1#3 hh sss ss hhhh hhhhhhhhhh hhhhhhhh
TARGET 1143 ANEMTPTRFA EIIEKNLKSA SSKTKVHIRP KSWIEEQEMG SFLSVAKGSE
1lam_1#3 175 anemtptkfa eiveenlksa siktdvfirp kswieeqemg sflsvakgse
TARGET hhhhh hhhhhhhhhh sssssss hhhhh hh hhhhhhh
1lam_1#3 hhhhh hhhhhhhhhh sssssss hhhhh hh hhhhhhh
TARGET 1193 EPPVFLEIHY MGSPNATEAP LVFVGKGITF DSGGISIKAS ANMDLMRADM
1lam_1#3 225 eppvfleihy kgspnasepp lvfvgkgitf dsggisikaa anmdlmradm
TARGET sssssss ss sssssssss sss sss hhh
1lam_1#3 sssssss ss sssssssss sss sss hhh
TARGET 1243 GGAATICSAI VSAAKLNLPI NIIGLAPLCE NMPSGKANKP GDVVRARNGK
1lam_1#3 275 ggaaticsai vsaakldlpi nivglaplce nmpsgkankp gdvvrarngk
TARGET hhhhhhhhhh hhhhhh s sssssssss sssss s
1lam_1#3 hhhhhhhhhh hhhhhh s sssssssss sssss s
TARGET 1293 TIQVDNTDAE GRLILADALC YAHTFNPKVI INAATLTGAM DVALGSGATG
1lam_1#3 325 tiqvdntdae grliladalc yahtfnpkvi inaatltgam dialgsgatg
TARGET ssss hhhhhhhhhh hhhh ss ssss hh hhh ss
1lam_1#3 ssss hhhhhhhhhh hhhh ss ssss hh hhh ss
TARGET 1343 VFTNSSWLWN KLFEASVETG DRVWRMPLFE HYTRQVIDCQ LADVNNLGKY
1lam_1#3 375 vftnsswlwn klfeasietg drvwrmplfe hytrqvidcq ladvnnigky
TARGET ss hhhhh hhhhhhhhh sssss hhhhhhh sss
1lam_1#3 ss hhhhh hhhhhhhhh sssss hhhhhhh sss
TARGET 1393 RSAGACTAAA FLREFVTHTK WAHLDIAGVM TNKDEIPYLR KGMSGRPTRT
1lam_1#3 425 rsagactaaa flkefvthpk wahldiagvm tnkdevpylr kgmagrptrt
TARGET hhhhhhh hhh s ssssss s ss sss hhh
1lam_1#3 hhhhhhh hhh s ssssss s ss sss hhh
TARGET 1443 LIEFLLRFSK - TKGLVLG IYAKDKDDDL PQFTSAGESF NKLVSGKLRE
1lam_1#3 475 lieflfrfsq ---tkglvlg iyskekeede pqftsagenf nklvsgklre
*
TARGET hhhhhhhhhh sssss ss ssshhhhhh hhh hhhh
1lam_1#3 hhhhhhhhh sssss ss ssshhhhhh hhh hhhh
TARGET 1490 MLNISGPPLK AGKTRTFYGL HQDFPSVVVV GLGKRSAGVD DQENWHEGKE
1lam_1#3 38 ilnisgpplk agktrtfygl hedfpsvvvv glgkktagid eqenwhegke
TARGET hhhh ssssssss s ssssssss ss hhhh
1lam_1#3 hhhh ssssssss s ssssssss ss hhhh
TARGET 1540 NIRAAVAAGC RQVQDLELPS VEVDPCGDAQ AAAEGAVLGL YEYDDLKQKK
1lam_1#3 88 niraavaagc rqiqdleips vevdpcgdaq aaaegavlgl yeyddlkqkr
TARGET hhhhhhhhhh hhhhh ss ssss hh hhhhhhhhh
1lam_1#3 hhhhhhhhhh hhhhh ss ssss hh hhhhhhhhh
TARGET 1590 KVAVSAKLHG SGDLEAWEKG VLFASGQNLA RHLMESPANE MTPTRFAEII
1lam_1#3 138 kvvvsaklhg sedqeawqrg vlfasgqnla rrlmetpane mtptkfaeiv
TARGET sssss hhhhhhh hhhhhhhhhh hhhhh hhhhhhhh
1lam_1#3 sssss hhhhhhh hhhhhhhhhh hhhhh hhhhhhhh
TARGET 1640 EKNLKSASSK TKVHIRPKSW IEEQEMGSFL SVAKGSEEPP VFLEIHYMGS
1lam_1#3 188 eenlksasik tdvfirpksw ieeqemgsfl svakgseepp vfleihykgs
TARGET hhhhhhh s ssssss hhh hh hhhhh hhhh sssssssss
1lam_1#3 hhhhhhh s ssssss hhh hh hhhhh hhhh sssssssss
TARGET 1690 PNATEAPLVF VGKGITFDSG GISIKASANM DLMRADMGGA ATICSAIVSA
1lam_1#3 238 pnasepplvf vgkgitfdsg gisikaaanm dlmradmgga aticsaivsa
TARGET sss ssssss ss s sss hhh hhh hhhhhhhhhh
1lam_1#3 sss ssssss ss s sss hhh hhh hhhhhhhhhh
TARGET 1740 AKLNLPINII GLAPLCENMP SGKANKPGDV VRARNGKTIQ VDNTDAEGRL
1lam_1#3 288 akldlpiniv glaplcenmp sgkankpgdv vrarngktiq vdntdaegrl
TARGET hhh ssss ssssss ss sss ssss s hhh
1lam_1#3 hhh ssss ssssss ss sss ssss s hhh
TARGET 1790 ILADALCYAH TFNPKVIINA ATLTGAMDVA LGSGATGVFT NSSWLWNKLF
1lam_1#3 338 iladalcyah tfnpkviina atltgamdia lgsgatgvft nsswlwnklf
TARGET hhhhhhhhhh h sssss s hhhhh ssss hhhhhhhh
1lam_1#3 hhhhhhhhhh h sssss s hhhhh ssss hhhhhhhh
TARGET 1840 EASVETGDRV WRMPLFEHYT RQVIDCQLAD VNNLGKYRSA GACTAAAFLR
1lam_1#3 388 easietgdrv wrmplfehyt rqvidcqlad vnnigkyrsa gactaaaflk
TARGET hhhhhh ss sss hhh h sss hhhhhhhhhh
1lam_1#3 hhhhhh ss sss hhh hhhh sss hhhhhhhhhh
TARGET 1890 EFVTHTKWAH LDIAGVMTNK DEIPYLRKGM SGRPTRTLIE FLLRFSK -
1lam_1#3 438 efvthpkwah ldiagvmtnk devpylrkgm agrptrtlie flfrfsq---
*
TARGET ssss sss sss ss s hhhhhh hhhhhhh
1lam_1#3 ssss sss sss ss s hhhhhh hhhhhh
TARGET 1937 TKGLVLGIYA KDKDDDLPQF TSAGESFNKL VSGKLREMLN ISGPPLKAGK
1lam_1#3 1 tkglvlgiys kekeedepqf tsagenfnkl vsgklreiln isgpplkagk
TARGET sssssss ss shhhhhhhhh hhhhhhh h s
1lam_1#3 sssssss ss shhhhhhhhh hhhhhhh h s
TARGET 1987 TRTFYGLHQD FPSVVVVGLG KRSAGVDDQE NWHEGKENIR AAVAAGCRQV
1lam_1#3 51 trtfyglhed fpsvvvvglg kktagideqe nwhegkenir aavaagcrqi
TARGET ssssssss s sssssssss hhhhhhh hhhhhhhhhh
1lam_1#3 ssssssss s sssssssss hhhhhhh hhhhhhhhhh
TARGET 2037 QDLELPSVEV DPCGDAQAAA EGAVLGLYEY DDLKQKKKVA VSAKLHGSGD
1lam_1#3 101 qdleipsvev dpcgdaqaaa egavlglyey ddlkqkrkvv vsaklhgsed
TARGET hh sssss s hhhhh hhhhhh sssss
1lam_1#3 hh sssss s hhhhh hhhhhh sssss
TARGET 2087 LEAWEKGVLF ASGQNLARHL MESPANEMTP TRFAEIIEKN LKSASSKTKV
1lam_1#3 151 qeawqrgvlf asgqnlarrl metpanemtp tkfaeiveen lksasiktdv
TARGET hhhhhhhhhh hhhhhhhhhh hh h hhhhhhhhhh hhhh ssss
1lam_1#3 hhhhhhhhhh hhhhhhhhhh hh h hhhhhhhhhh hhhh ssss
TARGET 2137 HIRPKSWIEE QEMGSFLSVA KGSEEPPVFL EIHYMGSPNA TEAPLVFVGK
1lam_1#3 201 firpkswiee qemgsflsva kgseeppvfl eihykgspna sepplvfvgk
TARGET sss hhhhh hhhhhhhh h sss ssssss ssssss
1lam_1#3 sss hhhhh hhhhhhhh h sss ssssss ssssss
TARGET 2187 GITFDSGGIS IKASANMDLM RADMGGAATI CSAIVSAAKL NLPINIIGLA
1lam_1#3 251 gitfdsggis ikaaanmdlm radmggaati csaivsaakl dlpinivgla
TARGET sss sss s ss hhh hhhhhh hhhhhhhhhh sssssss
1lam_1#3 sss sss s ss hhh hhhhhh hhhhhhhhhh sssssss
TARGET 2237 PLCENMPSGK ANKPGDVVRA RNGKTIQVDN TDAEGRLILA DALCYAHTFN
1lam_1#3 301 plcenmpsgk ankpgdvvra rngktiqvdn tdaegrlila dalcyahtfn
TARGET sss sssss sssss hhhhhh hhhhhhhh
1lam_1#3 sss sssss sssss hhhhhh hhhhhhhh
TARGET 2287 PKVIINAATL TGAMDVALGS GATGVFTNSS WLWNKLFEAS VETGDRVWRM
1lam_1#3 351 pkviinaatl tgamdialgs gatgvftnss wlwnklfeas ietgdrvwrm
TARGET ssssss hhhhh ssss h hhhhhhhhhh hhh sssss
1lam_1#3 ssssss hhhhh ssss h hhhhhhhhhh hhh sssss
TARGET 2337 PLFEHYTRQV IDCQLADVNN LGKYRSAGAC TAAAFLREFV THTKWAHLDI
1lam_1#3 401 plfehytrqv idcqladvnn igkyrsagac taaaflkefv thpkwahldi
TARGET hhhh sss hhh hhhhhhh sssssss
1lam_1#3 hhhhhh h sss hhh hhhhhhh sssssss
TARGET 2387 AGVMTNKDEI PYLRKGMSGR PTRTLIEFLL RFSK - TKG LVLGIYAKDK
1lam_1#3 451 agvmtnkdev pylrkgmagr ptrtlieflf rfsq---tkg lvlgiyskek
*
TARGET sss sss hhhhhhhhh hhhh s ssssss
1lam_1#3 sss sss hhhhhhhhh hhh s ssssss
TARGET 2434 DDDLPQFTSA GESFNKLVSG KLREMLNISG PPLKAGKTRT FYGLHQDFPS
1lam_1#3 14 eedepqftsa genfnklvsg klreilnisg pplkagktrt fyglhedfps
TARGET ssshh hhhhhhh hhhhhhhh ssss sssss ssss
1lam_1#3 ssshh hhhhhhh hhhhhhhh ssss sssss ssss
TARGET 2484 VVVVGLGKRS AGVDDQENWH EGKENIRAAV AAGCRQVQDL ELPSVEVDPC
1lam_1#3 64 vvvvglgkkt agideqenwh egkeniraav aagcrqiqdl eipsvevdpc
TARGET ssssss hhhhhhhhhh hhhhhhhhh ssssss
1lam_1#3 ssssss hhhhhhhhhh hhhhhhhhh ssssss
TARGET 2534 GDAQAAAEGA VLGLYEYDDL KQKKKVAVSA KLHGSGDLEA WEKGVLFASG
1lam_1#3 114 gdaqaaaega vlglyeyddl kqkrkvvvsa klhgsedqea wqrgvlfasg
TARGET hhhhhhhh hhh ss sss hhh hhhhhhhhhh
1lam_1#3 hhhhhhhh hhh ss sss hhh hhhhhhhhhh
TARGET 2584 QNLARHLMES PANEMTPTRF AEIIEKNLKS ASSKTKVHIR PKSWIEEQEM
1lam_1#3 164 qnlarrlmet panemtptkf aeiveenlks asiktdvfir pkswieeqem
TARGET hhhhhhhhh hhhh hhhhhhhhhh h sssssss hhhhh h
1lam_1#3 hhhhhhhhh hhhh hhhhhhhhhh h sssssss hhhhh h
TARGET 2634 GSFLSVAKGS EEPPVFLEIH YMGSPNATEA PLVFVGKGIT FDSGGISIKA
1lam_1#3 214 gsflsvakgs eeppvfleih ykgspnasep plvfvgkgit fdsggisika
TARGET hhhhhhhh ssssss sss sssssssss sss sss
1lam_1#3 hhhhhhhh ssssss sss sssssssss sss sss
TARGET 2684 SANMDLMRAD MGGAATICSA IVSAAKLNLP INIIGLAPLC ENMPSGKANK
1lam_1#3 264 aanmdlmrad mggaaticsa ivsaakldlp inivglaplc enmpsgkank
TARGET hhh hhhhhhhhh hhhhhhh ssssssssss
1lam_1#3 hhh hhhhhhhhh hhhhhhh ssssssssss
TARGET 2734 PGDVVRARNG KTIQVDNTDA EGRLILADAL CYAHTFNPKV IINAATLTGA
1lam_1#3 314 pgdvvrarng ktiqvdntda egrliladal cyahtfnpkv iinaatltga
TARGET sssss sssss hhhhhhhhh hhhhh s sssss h
1lam_1#3 sssss sssss hhhhhhhhh hhhhh s sssss h
TARGET 2784 MDVALGSGAT GVFTNSSWLW NKLFEASVET GDRVWRMPLF EHYTRQVIDC
1lam_1#3 364 mdialgsgat gvftnsswlw nklfeasiet gdrvwrmplf ehytrqvidc
TARGET hhhh s sss hhhh hhhhhhhhhh sssss hhhh
1lam_1#3 hhhh s sss hhhh hhhhhhhhhh sssss hhhhhhh
TARGET 2834 QLADVNNLGK YRSAGACTAA AFLREFVTHT KWAHLDIAGV MTNKDEIPYL
1lam_1#3 414 qladvnnigk yrsagactaa aflkefvthp kwahldiagv mtnkdevpyl
TARGET sss hhhhhh hhhh sssssss sss
1lam_1#3 sss hhhhhh hhhh sssssss sss
TARGET 2884 RKGMSGRPTR TLIEFLLRFS K
1lam_1#3 464 rkgmagrptr tlieflfrfs q-
TARGET sss hh hhhhhhhhhh h
1lam_1#3 sss hh hhhhhhhhhh
Template's ligands section
Ligands in the template:CO3 : 6,MRD : 18,ZN : 18.
Ligands in the template that will be assessed: ZN1, ZN1035, ZN1036, ZN1037, ZN1552, ZN1553, ZN1554, ZN2, ZN2069, ZN2070, ZN2071, ZN2586, ZN2587, ZN2588, ZN3, ZN518, ZN519, ZN520.
Model's ligands section
ZN1
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN1 will be included in the final model.
ZN1: conservation:True, RMSD:True, included: True
ZN2
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.030
Given the properties calculated previously, the ligand z.ZN2 will be included in the final model.
ZN2: conservation:True, RMSD:True, included: True
ZN3
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN3 will not be included in the final model.
ZN3: conservation:False, RMSD:False, included: False
ZN518
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN518 will be included in the final model.
ZN518: conservation:True, RMSD:True, included: True
ZN519
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN519 will be included in the final model.
ZN519: conservation:True, RMSD:True, included: True
ZN520
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN520 will not be included in the final model.
ZN520: conservation:False, RMSD:False, included: False
ZN1035
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN1035 will be included in the final model.
ZN1035: conservation:True, RMSD:True, included: True
ZN1036
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN1036 will be included in the final model.
ZN1036: conservation:True, RMSD:True, included: True
ZN1037
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN1037 will not be included in the final model.
ZN1037: conservation:False, RMSD:False, included: False
ZN1552
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN1552 will be included in the final model.
ZN1552: conservation:True, RMSD:True, included: True
ZN1553
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.040
Given the properties calculated previously, the ligand z.ZN1553 will be included in the final model.
ZN1553: conservation:True, RMSD:True, included: True
ZN1554
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN1554 will not be included in the final model.
ZN1554: conservation:False, RMSD:False, included: False
ZN2069
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN2069 will be included in the final model.
ZN2069: conservation:True, RMSD:True, included: True
ZN2070
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN2070 will be included in the final model.
ZN2070: conservation:True, RMSD:True, included: True
ZN2071
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN2071 will not be included in the final model.
ZN2071: conservation:False, RMSD:False, included: False
ZN2586
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.060
Given the properties calculated previously, the ligand z.ZN2586 will be included in the final model.
ZN2586: conservation:True, RMSD:True, included: True
ZN2587
All the residues interacting with the ligand are completely conserved between model and template.
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.040
Given the properties calculated previously, the ligand z.ZN2587 will be included in the final model.
ZN2587: conservation:True, RMSD:True, included: True
ZN2588
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand z.ZN2588 will not be included in the final model.
ZN2588: conservation:False, RMSD:False, included: False
The new model with the included ligands was saved successfully.
Quaternary Structure Annotation of the Template
1lam is annotated as HEXAMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1lam.pdb1.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=HEXAMER)
The corresponding reliability score is 0.532 (>0.5 indicates similarity)
Model was succesfully built as HEXAMER.
Template Selection
- Start SMR-Pipeline for:22f5174ae12ed0a8f81b0b0576f742b4 on BC2-cluster at Wed May 8 03:49:16
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 1 go for
modeling ...
- No A3m found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ***************************************************************************
- building model based on 1lamA (33-516) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:22f5174ae12ed0a8f81b0b0576f742b4 on BC2-cluster at Wed May 8 04:26:17
2013
Template Search
| Template Description |
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1lap: MOLECULAR STRUCTURE OF LEUCINE AMINOPEPTIDASE AT 2.7- ANGSTROMS RESOLUTION Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST |
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1bpm: DIFFERENTIATION AND IDENTIFICATION OF THE TWO CATALYTIC METAL BINDING SITES IN BOVINE LENS LEUCINE AMINOPEPTIDASEBY X-RAY CRYSTALLOGRAPHY Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST |
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1lam: LEUCINE AMINOPEPTIDASE (UNLIGATED) Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST |
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1lan: LEUCINE AMINOPEPTIDASE COMPLEX WITH L-LEUCINAL Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST |
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2j9a: BLLAP IN COMPLEX WITH MICROGININ FR1 Solved by: X-RAY, Resolution: 1.73A, Identified by BLAST |
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2ewb: THE CRYSTAL STRUCTURE OF BOVINE LENS LEUCINE AMINOPEPTIDASIN COMPLEX WITH ZOFENOPRILAT Solved by: X-RAY, Resolution: 1.85A, Identified by BLAST |
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1bpn: DIFFERENTIATION AND IDENTIFICATION OF THE TWO CATALYTIC METAL BINDING SITES IN BOVINE LENS LEUCINE AMINOPEPTIDASEBY X-RAY CRYSTALLOGRAPHY Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST |
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1lcp: BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH L-LEUCINPHOSPHONIC ACID Solved by: X-RAY, Resolution: 1.65A, Identified by BLAST |
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1bll: X-RAY CRYSTALLOGRAPHIC DETERMINATION OF THE STRUCTURE OF BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH AMASTATIN: FORMULATION OF A CATALYTIC MECHANISM FEATURINGA GEM-DIOLATE TRANSITION STATE Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.