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Model Overview

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339

Sequence

UniProt

Q9D0T2

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

Q9D0T2: 10090.ENSMUSP000

Domain

Link to: [ InterPro ]

DSPc

Model 3D Structure

	Model information:
	Modelled residue range:	26 to 161
	Based on template:	[ 2e0t ]
	Sequence Identity [%]:	39%
	Model date:	2013-02-22
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (2e0t): MONOMER Model: MONOMER

Ligand information:	[details]
Ligands in the template: none. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1       HAVEVRPG LYLGGAAAVA EPGHLREAGI TAVLTVDSEP AFPAGAGFE-
2e0t_1#2  61      hadevwpg lylgdqdman nrrelrrlgi thvlnashsr wrgtpeayeg
                                                                      
TARGET            sssss  s ssssshhh    hhhhhhh   ssssss               
2e0t_1#2          sssss  s ssssshhh    hhhhhhh   ssssss           hhhh


TARGET    48    -GLRSLFVPA LDKPETDLLS HLDRCVAFIG QARSEG-RAV LVHCHAGVSR
2e0t_1#2  109   lgirylgvea hdspafdmsi hfqtaadfih ralsqpggki lvhcavgvsr
                                                                      
TARGET             sssss           h    hhhhhhhh hhhh    ss sss     hh
2e0t_1#2        h  sssss           h    hhhhhhhh hhh     ss sss     hh


TARGET    96    SVAVVMAFIM KTDQLTFEKA YDILRTVKPE AK--VNEGFE WQL ------
2e0t_1#2  159   satlvlaylm lyhhltlvea ---ikkvkdh rgiipnrgfl rqllaldrrl
                                                                      
TARGET          hhhhhhhhhh h                hh           hh hhh       
2e0t_1#2        hhhhhhhhhh h     hhhh    hhhhhhh       hhhh hhhhhhhhhh


TARGET          -----                                                 
2e0t_1#2  206   rqgle                                                 
                                                                      
TARGET                                                                
2e0t_1#2        hh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Template without ligands. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 2e0t is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2e0t.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER) 
 The corresponding reliability score is 0.542 (>0.5 indicates similarity) 
 Model was succesfully built as MONOMER.

Template Selection

 - Start SMR-Pipeline for:1b5eda9e313016596b3b9bf2599693c0 on BC2-cluster at Fri Feb 22 18:16:35
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with D found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -       ********************************
 - building model based on 2e0tA (26-161) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:1b5eda9e313016596b3b9bf2599693c0 on BC2-cluster at Fri Feb 22 18:19:50
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

4erc: STRUCTURE OF VHZ BOUND TO METAVANADATE
Solved by: X-RAY, Resolution: 1.15A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	24-166	4ercA	19%	>target ----AGHAVEVRPGLYLG-GAA-AVAEPGHLREAGITAVLTVDSEPAFPAGAGFEGLRSLFVPALDKPETDLLSHLDRCVAFIGQARSEGRAVLVHCHAGVSRSVAVVMAFIMKTDQLTFEKAYDILRTVKPEAKVNEGFEWQLKLYEA--- >4ercA MGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPH-SDSCPGLTLHRLRIPDFCPPA-PDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK [Model]
	24-166	4ercB	19%	>target ----AGHAVEVRPGLYLG-GAA-AVAEPGHLREAGITAVLTVDSEPAFPAGAGFEGLRSLFVPALDKPETDLLSHLDRCVAFIGQARSEGRAVLVHCHAGVSRSVAVVMAFIMKTDQLTFEKAYDILRTVKPEAKVNEGFEWQLKLYEA--- >4ercB MGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPH-SDSCPGLTLHRLRIPDFCPPA-PDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK [Model]

2img: CRYSTAL STRUCTURE OF DUAL SPECIFICITY PROTEIN PHOSPHATASE 23 FROM HOMO SAPIENS IN COMPLEX WITH LIGAND MALATE ION
Solved by: X-RAY, Resolution: 1.93A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

25-166

2imgA

19%

4ge2: CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTCOMPLEX WITH COMPOUND 3
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	106-155	4ge2A	18%	>target -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFI-MK---T-DQLTFEKAYDILRTVKPEAKVNE---------------------- >4ge2A SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSA [Model]
	107-155	4ge2B	19%	>target ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAVLVHCHAGVSRSVAVVMAFI-MK---T-DQLTFEKAYDILRTVKPEAKVNE-------------------- >4ge2B SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMV [Model]

4ge5: CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTCOMPLEX WITH COMPOUND 5
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	106-155	4ge5A	18%	>target -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFI-MK---T-DQLTFEKAYDILRTVKPEAKVNE---------------------- >4ge5A SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSA [Model]
	106-155	4ge5B	18%	>target -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFI-MK---T-DQLTFEKAYDILRTVKPEAKVNE----------------------- >4ge5B SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSAH [Model]

2pa5: CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN9
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	106-155	2pa5A	18%	>target --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFIMK-----TDQLTFEKAYDILRTVKPEAKVNE----------------------- >2pa5A SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGAEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSAH [Model]
	106-155	2pa5B	18%	>target ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFIM-KT----DQLTFEKAYDILRTVKPEAKVNE-------------------- >2pa5B SVHVPGHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPSSAASLIDFLRVVRNQQSLAVSNMPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMV [Model]

4ge6: CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE PTCOMPLEX WITH COMPOUND 7
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	106-155	4ge6A	18%	>target ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMAFI-MK----TDQLTFEKAYDILRTVKPEAKVNE---------------------- >4ge6A SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSA [Model]
	106-156	4ge6B	16%	>target ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGRAVLVHCHAGVSRSVAVVMA-FIMK----TDQLTFEKAYDILRTVKPEAKVNEG---------------------- >4ge6B SVHVPGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSAH [Model]

4az1: CRYSTAL STRUCTURE OF THE TRYPANOSOMA CRUZI PROTEIN TYROSINPHOSPHATASE TCPTP1, A POTENTIAL THERAPEUTIC TARGET FOR CHDISEASE
Solved by: X-RAY, Resolution: 2.18A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	93-156	4az1A	15%	>target ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDRCVAFIGQARSE--GRAVLVHCHAGVSRSVAVVMAF-IMK---TDQ---LTFEKAYDILRTVKPEAKVNEG------------------------- >4az1A DSNCFPFTKLSVQAQYERVQREFSLLLRQEDPRSISFATSLKNRHKNRYLDILANEATLYPQVTDSTPYYINGNLIDLDLPHKFVACQAPVVQGIPDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITRRYLILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQYFVIYLTLMCRLGVDIKALVGLLN [Model]
	94-156	4az1B	15%	>target --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRCVAFIGQARSE--GRAVLVHCHAGVSRSVAVVMAFI-MK---TDQ---LTFEKAYDILRTVKPEAKVNEG-------------------- >4az1B SNCFPFTKLSVQAQYERVQREFSLLLRQEDPRSISFATSLKNRHKNRYLDILANEATLYPQVTDAPGASTPYYINGNLIDLDLPHKFVACQAPVVQGIPDFLAMLYEKKISLVIMVTKLEEGGFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITRRYLILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTVPVVVHCSAGIGRTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQYFVIYLTLMCRLGVDIKAL [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.