This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
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Template's ligands section Template without ligands. No ligands were included in the model.
Oligomer Modelling Log
Quaternary Structure Annotation of the Template 1fyv is annotated as MONOMER The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry The following biological unit was used to build the template structure: 1fyv.pdb1.gz
Quaternary Structure Modelling of the Target Protein The quaternary structure can be assumed to be identical Model was succesfully built as MONOMER.
Template Selection
- Start SMR-Pipeline for:4c7d2641b782d84a3035900d3f836eeb on BC2-cluster at Fri Feb 22 18:04:58
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 2
- But still uncovered regions of the target sequence detected, go for: HHSEARCH
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with C found
- No template with E found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with B found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with B found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with B found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with B found
- No template with C found
- No template with D found
- No template with B found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with A found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with A found
- No template with B found
- No template with D found
- No template with G found
- No template with F found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with K found
- No template with C found
- No template with E found
- No template with I found
- No template with H found
- No template with L found
- No template with A found
- No template with B found
- No template with G found
- No template with F found
- No template with J found
- No template with D found
- No template with B found
- No template with A found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- No template with C found
- No template with D found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:4): model based on new templates
- Send 4 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *****************************************************
- building model based on 3a79B (33-561) was not successful go to next best template
- ****************
- building model based on 1fyvA (630-785) was successful
- *****************************************************
- building model based on 3a79B (33-561) was not successful go to next best template
- ***************************************************
- building model based on 2z7xB (33-541) was successful
- **********************
- building model based on 3j0aB (384-600) was not successful go to next best template
- ********************
- building model based on 2o6qA (352-554) was successful
- *********************
- Oligomeric modeling of 3rfjA was not successful, fall back to monomeric modeling
- building model based on 3rfjA (371-582) was not successful go to next best template
- ****************************************
- building model based on 3j0aA (384-777) was successful
- *******************************************************
- building model based on 3cigA (34-578) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:4c7d2641b782d84a3035900d3f836eeb on BC2-cluster at Fri Feb 22 18:16:27
2013
If you are using models from the SWISS-MODEL Repository, please
cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004) The SWISS-MODEL Repository of annotated
three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.