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Model Overview
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1
67

Sequence
UniProt Q9GR61
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9GR61: 6239.Y37E3.3

Domain
Link to: [ InterPro ]
RNA_pol_N

Model 3D Structure
Model information:
Modelled residue range: 1 to 64
Based on template: [ 3h0g ]  
Sequence Identity [%]: 76%
Model date: 2013-02-21
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3h0g): HETERO 12-mer
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ZN: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MIIPIRCF TCGKVIGDKW ETYLGFLQSE YSEGDALDAL GLRRYCCRRM
3h0gV     1       miipircf scgkvigdkw dtyltllqed ntegealdkl glqryccrrm
                                                                      
TARGET                                hhhh           hhh            hh
3h0gV                                 hhh            hhh              


TARGET    49    LLAHVDLIEK LLNYHP                                     
3h0gV     49    ilthvdliek llcynp-                                    
                                                                      
TARGET          hh                                                    
3h0gV

Quality 


Template's ligands section 
Ligands in the template: ZN: 1. 
Ligands in the template that will be assessed: ZN1066. 
Model's ligands section 
ZN1066 
Not all the residues interacting with the ligand are completely conserved between model and template. 
No RMSD calculation will be performed. 
Given the properties calculated previously, the ligand V.ZN1066 will not be included in the final model. 
ZN1066: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3h0g is annotated as HETERO 12-mer 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3h0g.pdb2.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3h0g_2

Template Selection 
 - Start SMR-Pipeline for:6279252b56d907c474d874a0343a0940 on BC2-cluster at Thu Feb 21 11:08:55
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

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 - No template with D found
 - No template with E found
 - No template with F found
 - No template with G found
 - No template with H found
 - No template with I found
 - No template with K found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with O found
 - No template with P found
 - No template with Q found
 - No template with R found
 - No template with S found
 - No template with T found
 - No template with U found
 - No template with W found
 - No template with X found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  ****************************************************************************
 - building model based on 3h0gV (1-64) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:6279252b56d907c474d874a0343a0940 on BC2-cluster at Thu Feb 21 11:10:02
2013


Template Description
Match Chain SeqId

3h0g: RNA POLYMERASE II FROM SCHIZOSACCHAROMYCES POMBE
Solved by: X-RAY, Resolution: 3.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3h0gJ 77%
[Model]
1-64 3h0gV 77%
[Model]

3fki: 12-SUBUNIT RNA POLYMERASE II REFINED WITH ZN-SAD DATA
Solved by: X-RAY, Resolution: 3.88A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-65 3fkiJ 70%
[Model]

1twf: RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1twfJ 69%
[Model]

1twa: RNA POLYMERASE II COMPLEXED WITH ATP
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-63 1twaJ 69%
[Model]

3hoz: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX IV WITH A T-MISMATCH AND A FRAYED RNA 3'-GUANINE
Solved by: X-RAY, Resolution: 3.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3hozJ 69%
[Model]

3s1m: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARI
Solved by: X-RAY, Resolution: 3.13A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s1mJ 69%
[Model]

2r92: ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2r92J 69%
[Model]

3hou: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX I WITH A T-UMISMATCH
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3houJ 69%
[Model]
1-64 3houV 69%
[Model]

3s17: RNA POLYMERASE II INITIATION COMPLEX WITH A 9-NT RNA
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s17J 69%
[Model]

4a3i: RNA POLYMERASE II BINARY COMPLEX WITH DNA
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3iJ 69%
[Model]

3s2d: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA CONTAU
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s2dJ 69%
[Model]

3h3v: YEAST RNAP II CONTAINING POLY(A)-SIGNAL SEQUENCE IN THE ACTIVE SITE
Solved by: X-RAY, Resolution: 4.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3h3vK 69%
[Model]

3k7a: CRYSTAL STRUCTURE OF AN RNA POLYMERASE II-TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3k7aJ 69%
[Model]

3rzo: RNA POLYMERASE II INITIATION COMPLEX WITH A 4-NT RNA
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3rzoJ 69%
[Model]

4bbr: STRUCTURE OF RNA POLYMERASE II-TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4bbrJ 69%
[Model]

1y1w: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1y1wJ 69%
[Model]

2nvt: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP
Solved by: X-RAY, Resolution: 3.36A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2nvtJ 69%
[Model]

1i50: RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1i50J 69%
[Model]

3gtm: CO-COMPLEX OF BACKTRACKED RNA POLYMERASE II WITH TFIIS
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtmJ 69%
[Model]

1k83: CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITTHE INHIBITOR ALPHA AMANITIN
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1k83J 69%
[Model]

1y1v: REFINED RNA POLYMERASE II-TFIIS COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1y1vJ 69%
[Model]

3m3y: RNA POLYMERASE II ELONGATION COMPLEX C
Solved by: X-RAY, Resolution: 3.18A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3m3yJ 69%
[Model]

2ja5: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2ja5J 69%
[Model]

4a3k: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3kJ 69%
[Model]

3s1n: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARI
Solved by: X-RAY, Resolution: 3.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s1nJ 69%
[Model]

3qt1: RNA POLYMERASE II VARIANT CONTAINING A CHIMERIC RPB9-C11 S
Solved by: X-RAY, Resolution: 4.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3qt1J 69%
[Model]

3how: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX III WITH A TMISMATCH AND A FRAYED RNA 3'-URIDINE
Solved by: X-RAY, Resolution: 3.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3howJ 69%
[Model]

3s16: RNA POLYMERASE II INITIATION COMPLEX WITH AN 8-NT RNA
Solved by: X-RAY, Resolution: 3.24A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s16J 69%
[Model]

3hov: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX II
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3hovJ 69%
[Model]

4a3j: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID AND SOAKED WITH GMPCPP
Solved by: X-RAY, Resolution: 3.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3jJ 69%
[Model]

3rzd: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3rzdJ 69%
[Model]

2vum: ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.4A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2vumJ 69%
[Model]

1twh: RNA POLYMERASE II COMPLEXED WITH 2'DATP
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-63 1twhJ 69%
[Model]

2yu9: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH U
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2yu9J 69%
[Model]

2nvx: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DUTP
Solved by: X-RAY, Resolution: 3.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2nvxJ 69%
[Model]

2e2h: RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP
Solved by: X-RAY, Resolution: 3.95A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2e2hJ 69%
[Model]

2r7z: CISPLATIN LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2r7zJ 69%
[Model]

3po2: ARRESTED RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3po2J 69%
[Model]

1twg: RNA POLYMERASE II COMPLEXED WITH CTP
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-63 1twgJ 69%
[Model]

1wcm: COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1wcmJ 69%
[Model]

3gtg: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 12MER RNA
Solved by: X-RAY, Resolution: 3.78A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtgJ 69%
[Model]

3m4o: RNA POLYMERASE II ELONGATION COMPLEX B
Solved by: X-RAY, Resolution: 3.57A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3m4oJ 69%
[Model]

1nik: WILD TYPE RNA POLYMERASE II
Solved by: X-RAY, Resolution: 4.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1nikJ 69%
[Model]

4a93: RNA POLYMERASE II ELONGATION COMPLEX CONTAINING A CPD LESION
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a93J 69%
[Model]

2nvq: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2nvqJ 69%
[Model]

4a3m: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3mJ 69%
[Model]

1r5u: RNA POLYMERASE II TFIIB COMPLEX
Solved by: X-RAY, Resolution: 4.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1r5uJ 69%
[Model]

1r9t: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1r9tJ 69%
[Model]

4a3b: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3bJ 69%
[Model]

3s15: RNA POLYMERASE II INITIATION COMPLEX WITH A 7-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s15J 69%
[Model]

3s1q: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY WITH ATP
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s1qJ 69%
[Model]

1i3q: RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Solved by: X-RAY, Resolution: 3.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1i3qJ 69%
[Model]

4a3l: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3lJ 69%
[Model]

3s14: RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA
Solved by: X-RAY, Resolution: 2.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s14J 69%
[Model]

2ja6: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2ja6J 69%
[Model]

3gtq: BACKTRACKED RNA POLYMERASE II COMPLEX INDUCED BY DAMAGE
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtqJ 69%
[Model]

4a3e: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3eJ 69%
[Model]

2nvy: RNA POLYMERASE II FORM II IN 150 MM MN+2
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2nvyJ 69%
[Model]

2r93: ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP
Solved by: X-RAY, Resolution: 4.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2r93J 69%
[Model]

2e2i: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DGTP
Solved by: X-RAY, Resolution: 3.41A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2e2iJ 69%
[Model]

2e2j: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2e2jJ 69%
[Model]

1sfo: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.61A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1sfoJ 69%
[Model]

1y77: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX WITH SUBSTRATE ANALOGUE GMPCPP
Solved by: X-RAY, Resolution: 4.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1y77J 69%
[Model]

2nvz: RNA POLYMERASE II ELONGATION COMPLEX WITH UTP, UPDATED 11/2006
Solved by: X-RAY, Resolution: 4.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2nvzJ 69%
[Model]

2b8k: 12-SUBUNIT RNA POLYMERASE II
Solved by: X-RAY, Resolution: 4.15A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2b8kJ 69%
[Model]

4a3d: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT HYBRID
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3dJ 69%
[Model]

3s1r: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY WITH GTP
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s1rJ 69%
[Model]

3cqz: CRYSTAL STRUCTURE OF 10 SUBUNIT RNA POLYMERASE II IN COMPLEX WITH THE INHIBITOR ALPHA-AMANITIN
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3cqzJ 69%
[Model]

1twc: RNA POLYMERASE II COMPLEXED WITH GTP
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-63 1twcJ 69%
[Model]

1i6h: RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1i6hJ 69%
[Model]

3gtk: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 18MER RNA
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtkJ 69%
[Model]

4bbs: STRUCTURE OF AN INITIALLY TRANSCRIBING RNA POLYMERASE II- TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4bbsJ 69%
[Model]

3i4n: 8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLE
Solved by: X-RAY, Resolution: 3.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3i4nJ 69%
[Model]

3i4m: 8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLD
Solved by: X-RAY, Resolution: 3.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3i4mJ 69%
[Model]

3gtl: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER WITH G<>UMISMATCH
Solved by: X-RAY, Resolution: 3.38A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtlJ 69%
[Model]

3s2h: RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA CONTA2[PRIME]-IODO ATP
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3s2hJ 69%
[Model]

2b63: COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2b63J 69%
[Model]

3po3: ARRESTED RNA POLYMERASE II REACTIVATION INTERMEDIATE
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3po3J 69%
[Model]

1r9s: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Solved by: X-RAY, Resolution: 4.25A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 1r9sJ 69%
[Model]

3gto: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 15MER RNA
Solved by: X-RAY, Resolution: 4.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtoJ 69%
[Model]

3k1f: CRYSTAL STRUCTURE OF RNA POLYMERASE II IN COMPLEX WITH TFI
Solved by: X-RAY, Resolution: 4.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3k1fJ 69%
[Model]

4a3f: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3fJ 69%
[Model]

3hoy: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX VI
Solved by: X-RAY, Resolution: 3.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3hoyJ 69%
[Model]

3gtj: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER RNA
Solved by: X-RAY, Resolution: 3.42A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtjJ 69%
[Model]

2ja8: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2ja8J 69%
[Model]

3gtp: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 24MER RNA
Solved by: X-RAY, Resolution: 3.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3gtpJ 69%
[Model]

3hox: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX V
Solved by: X-RAY, Resolution: 3.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3hoxJ 69%
[Model]

2ja7: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 2ja7J 69%
[Model]
1-64 2ja7V 69%
[Model]

4a3c: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT HYBRID
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3cJ 69%
[Model]

4a3g: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 4a3gJ 69%
[Model]

3j0k: ORIENTATION OF RNA POLYMERASE II WITHIN THE HUMAN ACTIVATOMEDIATOR-POL II-TFIIF ASSEMBLY
Solved by: X-RAY, Resolution: 36.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-64 3j0kJ 69%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.