SWISS-MODEL Repository 
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SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] |
Alignment
TARGET 1 DQFQRLLKI NPDWKTHRLL
3ou6C 7 liesqlsyyr araseydatf vpymdsaap- -aalerlrag n---irgdvl
TARGET hhhhh ss
3ou6C hhhhhhhhh hhh h hhhhhh hhhhhhh ss
TARGET 20 DLGAGDGEVT KIMSPHFEEI YATELSETMI WQLQKKK--- --YRVLGINE
3ou6C 52 elasgtgywt rhlsgladrv taldgsaemi aeagrhgldn vefrqqdlfd
TARGET sss hhh hhhhhh ss sss hhhh hhh
3ou6C sss hhh hhhhhh ss ssss hhhh hhhhh s ssssss
TARGET 65 WQNTGFQYDV ISCLNLLDRC D--QPLTLLK DIRSVLEPTR GRVILALVLP
3ou6C 102 w-tpdrqwda vffahwlahv pddrfeafwe svrsavapg- gvvefvdvtd
TARGET ss sss hhhhh hhhh sssss
3ou6C ss sssss hhhhhh hhhh ssssssss
TARGET 113 FHPYVE-NVG GKWE-KPSEI LEIKGQNW-- ---EEQVNSL PEVFRKAGFV
3ou6C 150 herrleqqdd sepevavrrt lq-dgrsfri vkvfrspael terltalgws
TARGET hhh hh hhhhhhh
3ou6C hhhhhh ssssss s sssss ss hhhh hhhhhhh s
TARGET 156 IEAFTRLPY ------
3ou6C 199 csvdevhpgf lyatcr
TARGET
3ou6C ssssss ss ssssss
Template's ligands section
Ligands in the template:SAM : 1,SO4 : 1.
Ligands in the template that will be assessed: SAM300.
Model's ligands section
SAM300
Not all the residues interacting with the ligand are completely conserved between model and template.
No RMSD calculation will be performed.
Given the properties calculated previously, the ligand C.SAM300 will not be included in the model.
SAM300: conservation:False, RMSD:False, included: False
No ligands were included in the model.
Quaternary Structure Annotation of the Template
3ou6 is annotated as DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3ou6.pdb2.gz
Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 17.978) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode
The target structure was calculated as SINGLE CHAIN
Template Selection
- Start SMR-Pipeline for:b22f1f11863547eedc98eda750e62812 on BC2-cluster at Tue Apr 23 01:42:47
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with C found
- No template with B found
- No template with B found
- No template with C found
- No template with H found
- No template with F found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *****************************************
- building model based on 3ou6C (132-295) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:b22f1f11863547eedc98eda750e62812 on BC2-cluster at Tue Apr 23 01:44:28
2013
Template Search
| Template Description |
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3ou6: DHPI-SAM COMPLEX Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
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3ou7: DHPI-SAM-HEP COMPLEX Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
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3ou2: DHPI-SAH COMPLEX STRUCTURE Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH |
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4isc: CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE FROM PSESYRINGAE Solved by: X-RAY, Resolution: 2.78A, Identified by HHSEARCH |
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2igt: CRYSTAL STRUCTURE OF THE SAM DEPENDENT METHYLTRANSFERASE FROM AGROBACTERIUM TUMEFACIENS Solved by: X-RAY, Resolution: 1.89A, Identified by HHSEARCH |
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3e05: CRYSTAL STRUCTURE OF PRECORRIN-6Y C5,15-METHYLTRANSFERASE FROM GEOBACTER METALLIREDUCENS GS-15 Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.