SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
107

Sequence
UniProt Q9QUH0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9QUH0: 10090.ENSMUSP000

Domain
Link to: [ InterPro ]
Glutaredoxin

Model 3D Structure
Model information:
Modelled residue range: 2 to 106
Based on template: [ 1jhb ]  
Sequence Identity [%]: 89%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (1jhb): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       AQEFVNCK IQSGKVVVFI KPTCPYCRKT QEILSQLPFK QGLLEFVDIT
1jhbA     2       aqefvnck iqpgkvvvfi kptcpycrra qeilsqlpik qgllefvdit
                                                                      
TARGET              hhhhhh     ssssss      hhhhh hhhhh        sssssss 
1jhbA               hhhhhh     ssssss      hhhhh hhhhh        sssssss 


TARGET    49    ATNNTSAIQD YLQQLTGART VPRVFIGKDC IGGCSDLISM QQTGELMTRL
1jhbA     50    atnhtneiqd ylqqltgart vprvfigkdc iggcsdlvsl qqsgelltrl
                                                                      
TARGET              hhhhhh hhhhh        sssss ss s  hhhhhhh hh   hhhhh
1jhbA               hhhhhh hhhhh        sssss ss s  hhhhhhh hh   hhhhh


TARGET    99    KQIGALQ                                               
1jhbA     100   kqigalq-                                              
                                                                      
TARGET          hh                                                    
1jhbA           hh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 1jhb is annotated as MONOMER 
 The template structure (1jhb) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER) 
 The target structure was calculated as SINGLE CHAIN 
 The corresponding reliability score is 0.274 (>0.5 indicates similarity)

Template Selection 
 - Start SMR-Pipeline for:b859d6c376ec083230f57a46dc86e7af on BC2-cluster at Fri Feb 22 17:04:15
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  *******************************************************************************
 - building model based on 1jhbA (2-106) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:b859d6c376ec083230f57a46dc86e7af on BC2-cluster at Fri Feb 22 17:05:12
2013


Template Description
Match Chain SeqId

1jhb: HUMAN GLUTAREDOXIN IN FULLY REDUCED FORM, NMR, 20 STRUCTUR
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-106 1jhbA 90%
[Model]

1b4q: SOLUTION STRUCTURE OF HUMAN THIOLTRANSFERASE COMPLEX WITH GLUTATHIONE
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-106 1b4qA 86%
[Model]

1kte: CRYSTAL STRUCTURE OF THIOLTRANSFERASE AT 2.2 ANGSTROM RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-106 1kteA 80%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.