SWISS-MODEL Repository - Model Details

Model Overview
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1
1020

Sequence
UniProt Q9U1K1
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9U1K1: 7227.FBpp0080884

Domain
Link to: [ InterPro ]

Model 3D Structure
Model information:
Modelled residue range: 222 to 331
Based on template: [ 2yle ]  
Sequence Identity [%]: 33%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (2yle): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
2yleA     34    gssrdalsle eilrlynqpi neeqawavcy qccgslraaa rrrqprhrvr
                                                                      
                                                       
2yleA               sssssh hhhhhh      hhhhhhhhh hhhhhhhhhh h         


TARGET    1                                      KIISELAEIV YTALDYNLPE
2yleA     84    saaqirvwrd gavtlapakl gysqcmet-- evieslgiii ykaldyglke
                                                                      
TARGET                                            hhhhhhhhh hhhhh     
2yleA              ssssss   sssss           hh   hhhhhhhhhh hhhhh     


TARGET    21    DEECQVSQEL ENLFNFMTAD ETDDDCIDEG IDEGDKRWDD ESEE--ERND
2yleA     144   neerelsppl eqlidhma-- ---------- ---------n tveekrkisa
                                                                      
TARGET                 hhh hhhhhhhsss ss  sss  s ss    ssss s         
2yleA                  hhh hhhhhhhh                                   


TARGET    69    TKELEHIIET CRNHIKTT-L PENHYRAVCR ALVTETIELR VFL       
2yleA     193   irsyrdvmkl caahlptesd apnhyqavcr alfaetmelh tflt      
                                                                      
TARGET             hhhhhhh hhh         hhhhhhhhh hhhhhhhhhh h         
2yleA              hhhhhhh hhh     hh hhhhhhhhhh hhhhhhhhhh h

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 2yle is annotated as HETERO DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2yle.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 2yle_1

Template Selection 
 - Start SMR-Pipeline for:6b62128c9a6c1898f2c7a9ea43c78035 on BC2-cluster at Fri Feb 22 09:50:42
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                  *********
 - building model based on 2yleA (222-331) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:6b62128c9a6c1898f2c7a9ea43c78035 on BC2-cluster at Fri Feb 22 09:52:02
2013


Template Description
Match Chain SeqId

3ue5: ECP-CLEAVED ACTIN IN COMPLEX WITH SPIR DOMAIN D
Solved by: X-RAY, Resolution: 2.76A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

457-481 3ue5B 100%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.