SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures

Sequence
UniProt Q9U489
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9U489: 6239.C12C8.3a

Domain
Link to: [ InterPro ]
Filamin
NHL
NHL
NHL
NHL
NHL
NHL

Model 3D Structure
Model information:
Modelled residue range: 824 to 919
Based on template: [ 3fvz ]  
Sequence Identity [%]: 33%
Model date: 2014-09-19
Revision date: 2014-09-17

Quaternary structure information: [details]
Template (3fvz): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: GOL: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

                                                       
3fvzA     492   hhhhhhdfhv eeeldwpgvy llpgqvsgva ldsknnlvif hrgdhvwdgn
                                                                      
                                                       
3fvzA                 ssss sss    hh      ssssss ss   sssss ss        


                                                       
3fvzA     542   sfdskfvyqq rglgpieedt ilvidpnnae ilqssgknlf ylphglsidt
                                                                      
                                                       
3fvzA           sss   sss           s sssss    s sssss       ssssssss 


TARGET    1                         D EIAAKGPILT FGK---EGSG DGELCRPWGI
3fvzA     592   dgnywvtdva lhqvfkl--d phskegplli lgrsmqpgsd qnhfcqptdv
                                                                      
TARGET                                                              ss
3fvzA             sssssss    sssss            ss s                  ss


TARGET    29    CVD-QRGRVI VADR-SNNRV QIFDKDGNFI SKFGT--S-- GNRPGQFDRP
3fvzA     640   avepstgavf vsdgycnsri vqfspsgkfv tqwgeessgs sprpgqfsvp
                                                                      
TARGET          s       ss ssss   sss ssss   sss ssshh  h   h      sss
3fvzA           sss    sss sss    sss ssss   sss sssss             sss


TARGET    73    AGITTNSLN- NIVVADKDNH RVQVF ---- ---------- ----------
3fvzA     690   hslalvphld qlcvadreng riqcfktdtk efvreikhas fgrnvfaisy
                                                                      
TARGET          ssssss     ssssssss   sssss                           
3fvzA           ssssss   s ssssssss   sssssss    ssssss           ssss


TARGET          ---------- ---------- ---------- ---------- ----------
3fvzA     740   ipgflfavng kpyfgdqepv qgfvmnfssg eiidvfkpvr khfdmphdiv
                                                                      
TARGET                                                                
3fvzA           s ssssss               ssssss    ssssss         ssssss


TARGET          ---------- ---------- ---------- -                    
3fvzA     790   asedgtvyig dahtntvwkf tltekmehrs v                    
                                                                      
TARGET                                                                
3fvzA           ss  ssssss ss   sssss sssss                           



Quality


Template's ligands section
Ligands in the template: GOL: 2.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3fvz is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3fvz.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 33.962) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:3f8ab73484fdb769038270bf2f68a84e on BC2-cluster at Fri Sep 19 07:21:48
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with A found
 - No template with C found
 - No template with Y found
 - No template with D found
 - No template with F found
 - No template with P found
 - No template with A found
 - No template with C found
 - No template with Y found
 - No template with D found
 - No template with F found
 - No template with P found
 - No template with A found
 - No template with C found
 - No template with Y found
 - No template with D found
 - No template with F found
 - No template with P found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with C found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with F found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with D found
 - No template with F found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:7): model based on new templates
 - Send 7 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                          *******
 - building model based on 3fvzA (824-919) was successful 
 -                                                              **************
 - building model based on 1q7fA (881-1079) was successful 
 -                                                           ****************
 - building model based on 1q7fA (835-1065) was successful 
 -                                                            *********************
 - building model based on 4j82B (848-1147) was successful 
 -                           ***
 - building model based on 4tn3A (373-416) was successful 
 -                                  ***********
 - building model based on 4tn3A (478-639) was successful 
 -                  **
 - building model based on 3mkqE (242-271) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:3f8ab73484fdb769038270bf2f68a84e on BC2-cluster at Fri Sep 19 07:28:31
2014 




Template Description
Match Chain SeqId

4j84: CRYSTAL STRUCTURE OF BETA'-COP/SCYL1 COMPLEX
Solved by: X-RAY, Resolution: 1.47A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j84A 14%
[Model]
847-1015 4j84A 9%
[Model]
847-1063 4j84A 9%
[Model]
848-882 4j84A 6%
[Model]
846-1070 4j84A 11%
[Model]
854-967 4j84A 5%
[Model]
893-1147 4j84A 10%
[Model]
849-1025 4j84B 9%
[Model]
847-1015 4j84B 8%
[Model]
848-1073 4j84B 15%
[Model]
846-1073 4j84B 11%
[Model]
854-930 4j84B 4%
[Model]
893-1147 4j84B 10%
[Model]
1041-1064 4j84A 8%
[Model]
1041-1064 4j84B 8%
[Model]
995-1015 4j84B 23%
[Model]

4qrj: CRYSTAL STRUCTURE OF A PUTATIVE 6-PHOSPHOGLUCONOLACTONASE (BACUNI_04672) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 2.RESOLUTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

940-1063 4qrjB 12%
[Model]
941-1053 4qrjA 11%
[Model]
850-1065 4qrjB 14%
[Model]
845-1043 4qrjA 11%
[Model]
848-1065 4qrjA 15%
[Model]
844-1027 4qrjB 11%
[Model]
893-1147 4qrjB 12%
[Model]
893-1147 4qrjA 11%
[Model]
846-996 4qrjA 10%
[Model]
846-995 4qrjB 11%
[Model]
938-1147 4qrjA 12%
[Model]
847-864 4qrjB 16%
[Model]
905-1147 4qrjB 12%
[Model]
845-921 4qrjA 14%
[Model]
844-925 4qrjA 13%
[Model]
894-919 4qrjB 19%
[Model]
965-974 4qrjA 20%
[Model]

4j73: CRYSTAL STRUCTURE OF BETA'-COP/P25 COMPLEX
Solved by: X-RAY, Resolution: 1.44A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1025 4j73A 9%
[Model]
847-1016 4j73A 7%
[Model]
848-1073 4j73A 14%
[Model]
846-1072 4j73A 11%
[Model]
855-929 4j73A 4%
[Model]
893-1147 4j73A 10%
[Model]
949-1016 4j73A 16%
[Model]
1041-1065 4j73A 8%
[Model]

2ynp: YEAST BETAPRIME COP 1-604 WITH KTKTN MOTIF
Solved by: X-RAY, Resolution: 2.96A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

845-883 2ynpA 5%
[Model]
851-929 2ynpA 5%
[Model]
847-976 2ynpA 7%
[Model]
1120-1144 2ynpA 15%
[Model]
962-976 2ynpA 31%
[Model]
916-929 2ynpA 33%
[Model]
848-858 2ynpA 27%
[Model]
894-909 2ynpA 13%
[Model]

4psw: CRYSTAL STRUCTURE OF HISTONE ACETYLTRANSFERASE COMPLEX
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

856-1065 4pswB 9%
[Model]
848-1065 4pswB 7%
[Model]
904-1017 4pswB 12%
[Model]

4tn3: STRUCTURE OF THE BBOX-COILED-COIL REGION OF RHESUS TRIM5AL
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

472-642 4tn3B 12%
[Model]
476-590 4tn3A 11%
[Model]
537-612 4tn3B 9%
[Model]
478-639 4tn3A 12%
[Model]
373-416 4tn3A 13%
[Model]

2g8s: CRYSTAL STRUCTURE OF THE SOLUBLE ALDOSE SUGAR DEHYDROGENAS(ASD) FROM ESCHERICHIA COLI IN THE APO-FORM
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

844-1146 2g8sA 8%
[Model]
846-1015 2g8sA 13%
[Model]
846-913 2g8sA 6%
[Model]
845-968 2g8sA 11%
[Model]
892-1057 2g8sA 11%
[Model]
939-1064 2g8sA 13%
[Model]
939-1055 2g8sA 10%
[Model]
844-1146 2g8sB 8%
[Model]
845-1016 2g8sB 14%
[Model]
856-920 2g8sB 11%
[Model]
845-968 2g8sB 11%
[Model]
846-974 2g8sB 9%
[Model]
891-1057 2g8sB 11%
[Model]
939-1064 2g8sB 13%
[Model]
938-1056 2g8sB 9%
[Model]
871-884 2g8sB 29%
[Model]
870-884 2g8sA 27%
[Model]
857-876 2g8sA 10%
[Model]

4ozu: CRYSTAL STRUCTURE OF WD40 DOMAIN FROM TOXOPLASMA GONDII CO
Solved by: X-RAY, Resolution: 1.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1015 4ozuA 8%
[Model]
846-1066 4ozuA 5%
[Model]
847-1068 4ozuA 8%
[Model]
850-1065 4ozuA 10%
[Model]
942-1071 4ozuA 10%
[Model]

2ynn: YEAST BETAPRIME COP 1-304 WITH KTKTN MOTIF
Solved by: X-RAY, Resolution: 1.78A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

848-1147 2ynnA 13%
[Model]
848-1016 2ynnA 8%
[Model]
847-1063 2ynnA 9%
[Model]
846-1066 2ynnA 11%
[Model]
848-920 2ynnA 9%
[Model]
855-967 2ynnA 5%
[Model]
893-1066 2ynnA 12%
[Model]
1041-1064 2ynnA 8%
[Model]

3mkq: CRYSTAL STRUCTURE OF YEAST ALPHA/BETAPRIME-COP SUBCOMPLEX VESICULAR COAT
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

242-271 3mkqA 7%
[Model]
849-1144 3mkqE 10%
[Model]
843-1144 3mkqC 9%
[Model]
842-1144 3mkqA 9%
[Model]
847-874 3mkqC 14%
[Model]
847-882 3mkqA 5%
[Model]
895-920 3mkqA 4%
[Model]
904-958 3mkqC 12%
[Model]
904-952 3mkqE 12%
[Model]
904-952 3mkqA 12%
[Model]
960-1000 3mkqC 14%
[Model]
959-1000 3mkqA 14%
[Model]
242-271 3mkqE 7%
[Model]
847-858 3mkqE 25%
[Model]
1131-1142 3mkqE 25%
[Model]
847-858 3mkqA 25%
[Model]
1132-1139 3mkqC 25%
[Model]
243-252 3mkqC 10%
[Model]
896-920 3mkqE 4%
[Model]
244-252 3mkqE 11%
[Model]
970-975 3mkqE 50%
[Model]
898-920 3mkqC 4%
[Model]
245-252 3mkqA 13%
[Model]
898-913 3mkqC 25%
[Model]

2yno: YEAST BETAPRIME COP 1-304H6
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

848-1147 2ynoA 13%
[Model]
847-1019 2ynoA 9%
[Model]
848-1018 2ynoA 11%
[Model]
847-1065 2ynoA 10%
[Model]
848-920 2ynoA 9%
[Model]
855-967 2ynoA 5%
[Model]
893-1066 2ynoA 12%
[Model]
996-1065 2ynoA 10%
[Model]
848-1147 2ynoB 13%
[Model]
847-1019 2ynoB 9%
[Model]
848-1018 2ynoB 11%
[Model]
847-1065 2ynoB 10%
[Model]
848-920 2ynoB 9%
[Model]
855-967 2ynoB 5%
[Model]
893-1066 2ynoB 12%
[Model]
996-1065 2ynoB 10%
[Model]

4psx: CRYSTAL STRUCTURE OF HISTONE ACETYLTRANSFERASE COMPLEX
Solved by: X-RAY, Resolution: 2.51A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

851-1065 4psxB 8%
[Model]
848-1065 4psxB 7%
[Model]
896-1064 4psxB 9%
[Model]
851-1065 4psxE 8%
[Model]
848-1065 4psxE 7%
[Model]
896-1064 4psxE 9%
[Model]

4j79: CRYSTAL STRUCTURE OF BETA'-COP/PEDVSPIKE COMPLEX
Solved by: X-RAY, Resolution: 1.56A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j79A 14%
[Model]
847-1016 4j79A 8%
[Model]
848-1063 4j79A 9%
[Model]
848-882 4j79A 6%
[Model]
846-1071 4j79A 10%
[Model]
854-967 4j79A 5%
[Model]
893-1147 4j79A 10%
[Model]
1041-1064 4j79A 8%
[Model]

4j86: CRYSTAL STRUCTURE OF BETA'-COP/YWBP1 COMPLEX
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j86A 14%
[Model]
846-1016 4j86A 8%
[Model]
846-1070 4j86A 11%
[Model]
846-1063 4j86A 9%
[Model]
848-920 4j86A 9%
[Model]
855-967 4j86A 5%
[Model]
893-1147 4j86A 10%
[Model]
996-1065 4j86A 10%
[Model]
847-1147 4j86B 14%
[Model]
847-1016 4j86B 8%
[Model]
849-882 4j86B 6%
[Model]
847-1063 4j86B 10%
[Model]
846-1070 4j86B 11%
[Model]
854-967 4j86B 5%
[Model]
893-1147 4j86B 10%
[Model]
996-1066 4j86B 9%
[Model]

4j78: CRYSTAL STRUCTURE OF BETA'-COP/EMP47P COMPLEX
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j78A 14%
[Model]
847-1016 4j78A 8%
[Model]
849-882 4j78A 6%
[Model]
847-1063 4j78A 10%
[Model]
846-1070 4j78A 11%
[Model]
854-967 4j78A 5%
[Model]
893-1147 4j78A 10%
[Model]
996-1066 4j78A 9%
[Model]

4j82: CRYSTAL STRUCTURE OF BETA'-COP/INSIG-2 COMPLEX
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j82A 14%
[Model]
847-1016 4j82A 8%
[Model]
849-882 4j82A 6%
[Model]
847-1063 4j82A 10%
[Model]
846-1070 4j82A 11%
[Model]
854-967 4j82A 5%
[Model]
893-1147 4j82A 10%
[Model]
996-1066 4j82A 9%
[Model]
847-1016 4j82B 8%
[Model]
847-1063 4j82B 9%
[Model]
847-1066 4j82B 11%
[Model]
848-920 4j82B 9%
[Model]
855-967 4j82B 5%
[Model]
893-1147 4j82B 10%
[Model]
996-1066 4j82B 10%
[Model]
848-1147 4j82B 13%
[Model]

4j81: CRYSTAL STRUCTURE OF BETA'-COP/INSIG-1 COMPLEX
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j81A 14%
[Model]
847-1016 4j81A 8%
[Model]
849-882 4j81A 6%
[Model]
847-1063 4j81A 10%
[Model]
846-1070 4j81A 11%
[Model]
854-967 4j81A 5%
[Model]
893-1147 4j81A 10%
[Model]
996-1066 4j81A 9%
[Model]
847-1147 4j81B 14%
[Model]
847-1016 4j81B 8%
[Model]
849-882 4j81B 6%
[Model]
847-1063 4j81B 10%
[Model]
846-1070 4j81B 11%
[Model]
854-967 4j81B 5%
[Model]
893-1147 4j81B 10%
[Model]
996-1066 4j81B 9%
[Model]

4j77: CRYSTAL STRUCTURE OF BETA'-COP/HWBP1 COMPLEX
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

847-1147 4j77A 14%
[Model]
847-1016 4j77A 8%
[Model]
849-882 4j77A 6%
[Model]
847-1063 4j77A 10%
[Model]
846-1070 4j77A 11%
[Model]
854-967 4j77A 5%
[Model]
893-1147 4j77A 10%
[Model]
996-1066 4j77A 9%
[Model]
847-1147 4j77B 14%
[Model]
846-1016 4j77B 8%
[Model]
846-1071 4j77B 11%
[Model]
847-1063 4j77B 9%
[Model]
855-967 4j77B 5%
[Model]
893-1066 4j77B 12%
[Model]
995-1066 4j77B 9%
[Model]
896-919 4j77B 17%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.