SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
218

Sequence
UniProt Q9V464
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9V464: 7227.FBpp0074715

Domain
Link to: [ InterPro ]
ASF1_hist_chap

Model 3D Structure
Model information:
Modelled residue range: 1 to 153
Based on template: [ 3aad ]  
Sequence Identity [%]: 75%
Model date: 2013-05-07
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (3aad): HETERO TRIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: SO4: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

TARGET    1       MAKVHITN VVVLDNPSSF FNPFQFELTF ECIEELKEDL EWKMIYVGSA
3aadB     1       makvqvnn vvvldnpspf ynpfqfeitf eciedlsedl ewkiiyvgsa
                                                                      
TARGET              ssssss ssss          sssssss sss      s sssssss   
3aadB               ssssss ssss          sssssss sss      s sssssss   


TARGET    49    ESEEHDQVLD TIYVGPVPEG RHIFVFQADP PDVSKIPEPD AVGVTIVLLT
3aadB     49    eseeydqvld svlvgpvpag rhmfvfqada pnpglipdad avgvtvvlit
                                                                      
TARGET                sss   sss     s ssssssss                ssssssss
3aadB                 sss   sss     s ssssssss                ssssssss


TARGET    99    CSYRGQEFVR VGYYVNNDYA DPEMRENPPT KPLFEKLTRN ILASKPRVTR
3aadB     99    ctyrgqefir vgyyvnneyt etelrenppv kpdfsklqrn ilasnprvtr
                                                                      
TARGET          sss  sssss ssssssss     hhh             sss ss    ssss
3aadB           sss  sssss ssssssss     hhh             sss ss    ssss


TARGET    149   FKINW                                                 
3aadB     149   fhinw-                                                
                                                                      
TARGET          s                                                     
3aadB           s

Quality 


Template's ligands section 
Ligands in the template: SO4: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3aad is annotated as HETERO TRIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3aad.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3aad_1

Template Selection 
 - Start SMR-Pipeline for:434edeffd450e6b1fcd71cbd403147f1 on BC2-cluster at Tue May  7 09:55:29
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - No template with F found
 - No template with E found
 - No template with F found
 - No template with E found
 - No template with A found
 - No template with A found
 - No template with J found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with O found
 - No template with P found
 - No template with J found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with O found
 - No template with P found
 - No template with B found
 - No template with B found
 - No template with E found
 - No template with F found
 - No template with G found
 - No template with F found
 - No template with G found
 - No template with E found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with C found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 - ********************************************************
 - building model based on 3aadB (1-153) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:434edeffd450e6b1fcd71cbd403147f1 on BC2-cluster at Tue May  7 10:00:51
2013


Template Description
Match Chain SeqId

3aad: STRUCTURE OF THE HISTONE CHAPERONE CIA/ASF1-DOUBLE BROMODOLINKING HISTONE MODIFICATIONS AND SITE-SPECIFIC HISTONE E
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-152 3aadD 76%
[Model]
1-153 3aadB 76%
[Model]

2iij: STRUCTURE OF HUMAN ASF1A IN COMPLEX WITH HISTONE H3
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-154 2iijA 75%
[Model]

1tey: NMR STRUCTURE OF HUMAN HISTONE CHAPERONE, ASF1A
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-154 1teyA 75%
[Model]

2io5: CRYSTAL STRUCTURE OF THE CIA- HISTONE H3-H4 COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-154 2io5A 75%
[Model]

2i32: STRUCTURE OF A HUMAN ASF1A-HIRA COMPLEX AND INSIGHTS INTO SPECIFICITY OF HISTONE CHAPERONE COMPLEX ASSEMBLY
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-154 2i32A 75%
[Model]
1-154 2i32B 75%
[Model]

2ygv: CONSERVED N-TERMINAL DOMAIN OF THE YEAST HISTONE CHAPERONEASF1 IN COMPLEX WITH THE C-TERMINAL FRAGMENT OF RAD53
Solved by: X-RAY, Resolution: 2.94A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-154 2ygvA 60%
[Model]
2-155 2ygvA 58%
[Model]
1-155 2ygvB 59%
[Model]
1-155 2ygvC 59%
[Model]
1-154 2ygvD 58%
[Model]

1roc: CRYSTAL STRUCTURE OF THE HISTONE DEPOSITION PROTEIN ASF1
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-154 1rocA 60%
[Model]
1-154 1rocA 58%
[Model]

4eo5: YEAST ASF1 BOUND TO H3/H4G94P MUTANT
Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-159 4eo5A 57%
[Model]

1wg3: STRUCTURAL ANALYSIS OF YEAST NUCLEOSOME-ASSEMBLY FACTOR CIA1P
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-159 1wg3A 57%
[Model]

2idc: STRUCTURE OF THE HISTONE H3-ASF1 CHAPERONE INTERACTION
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-154 2idcA 60%
[Model]
1-159 2idcA 57%
[Model]

2hue: STRUCTURE OF THE H3-H4 CHAPERONE ASF1 BOUND TO HISTONES H3AND H4
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-154 2hueA 60%
[Model]
1-161 2hueA 56%
[Model]

2z34: CRYSTAL STRUCTURE OF SPCIA1/ASF1 COMPLEX WITH HIP1
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-154 2z34A 54%
[Model]
2-154 2z34B 54%
[Model]

2cu9: CRYSTAL STRUCTURE OF HISTONE CHAPERONE CIA1
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-155 2cu9A 52%
[Model]

2dze: CRYSTAL STRUCTURE OF HISTONE CHAPERONE ASF1 IN COMPLEX WITA C-TERMINUS OF HISTONE H3
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-155 2dzeB 52%
[Model]
1-154 2dzeA 53%
[Model]

2z3f: CRYSTAL STRUCTURE OF SPCIA1/ASF1 COMPLEXED WITH CAC2 PEPTI
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-155 2z3fC 52%
[Model]
2-155 2z3fB 52%
[Model]
2-155 2z3fE 52%
[Model]
2-155 2z3fA 52%
[Model]
2-155 2z3fH 52%
[Model]
2-155 2z3fD 52%
[Model]
2-155 2z3fG 52%
[Model]
3-155 2z3fF 52%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.