SWISS-MODEL Repository - Model Details

Model Overview
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1
125

Sequence
UniProt Q9V8I2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9V8I2: 7227.FBpp0085873

Domain
Link to: [ InterPro ]
Robl_LC7

Model 3D Structure
Model information:
Modelled residue range: 4 to 119
Based on template: [ 1sko ]  
Sequence Identity [%]: 70%
Model date: 2013-02-21
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (1sko): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1     PKALTQVLSQ ANTGGVENTL LLSQEGALLA YSGYGDKDAR ITAAIASNIW
1skoB     3     pkaltqvlsq antggvqstl llnnegslla ysgygdtdar vtaaiasniw
                                                                      
TARGET            hhhhhhhh     ssssss sss   ssss ssss    hh hhhhhhhhhh
1skoB             hhhhhhhh     ssssss sss   ssss ssss    hh hhhhhhhhhh


TARGET    51    AAYEKHGRNA FREGRLTFVL IDCENGHVAI TQVASVLLCL YAKQTVGLGL
1skoB     53    aaydrngnqa fnedslkfil mdcmegrvai trvanlllcm yaketvgfgm
                                                                      
TARGET          hhhh               ss sss  sssss sss  sssss sss    hhh
1skoB           hhhh               ss sss  sssss sss  sssss sss    hhh


TARGET    101   LKQKAMSLAS YLERPL                                     
1skoB     103   lkakaqalvq yleepl-                                    
                                                                      
TARGET          hhhhhhhhhh hh                                         
1skoB           hhhhhhhhhh hh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 1sko is annotated as HETERO DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1sko.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 1sko_1

Template Selection 
 - Start SMR-Pipeline for:eeec96b2dad23405321a195f5e61c7ee on BC2-cluster at Thu Feb 21 19:12:15
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -    **************************************************************************
 - building model based on 1skoB (4-119) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:eeec96b2dad23405321a195f5e61c7ee on BC2-cluster at Thu Feb 21 19:13:11
2013


Template Description
Match Chain SeqId

1sko: MP1-P14 COMPLEX
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-119 1skoB 71%
[Model]

1szv: STRUCTURE OF THE ADAPTOR PROTEIN P14 REVEALS A PROFILIN- LIKE FOLD WITH NOVEL FUNCTION
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-125 1szvA 70%
[Model]

2zl1: MP1-P14 SCAFFOLDING COMPLEX
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-116 2zl1B 70%
[Model]

3cpt: MP1-P14 SCAFFOLDING COMPLEX
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-116 3cptB 70%
[Model]

1vet: CRYSTAL STRUCTURE OF P14/MP1 AT 1.9 A RESOLUTION
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-118 1vetB 70%
[Model]

1veu: CRYSTAL STRUCTURE OF THE P14/MP1 COMPLEX AT 2.15 A RESOLUTION
Solved by: X-RAY, Resolution: 2.15A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-123 1veuB 69%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.