SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures

Sequence
UniProt Q9VHH9
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
F-box
zf-CXXC
LRR_6
Cupin_8

Model 3D Structure
Model information:
Modelled residue range: 678 to 716
Based on template: [ 3qmd ]  
Sequence Identity [%]: 57%
Model date: 2013-05-07
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (3qmd): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: DC: 2, DG: 2, DT: 1, ZN: 2.
Ligands in the model: ZN: 2
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

TARGET    1           CKNC AACQR-SDCG TCPFCMDMVK FGGPGRAKQT CMMRQC ---
3qmdA     169   sarm--cgec eacrrtedcg hcdfcrdmkk fggpnkirqk crlrqcqlra
                                                                      
TARGET                     hhhh         hhhh                          
3qmdA                      hhhh         hhhh                          


TARGET          -----                                                 
3qmdA     217   resyk                                                 
                                                                      
TARGET                                                                
3qmdA

Quality 


Template's ligands section 
Ligands in the template: DC: 2, DG: 2, DT: 1, ZN: 2. 
Ligands in the template that will be assessed: ZN300, ZN301. 
Model's ligands section 
ZN300 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.050 
Given the properties calculated previously, the ligand A.ZN300 will be included in the final model. 
ZN300: conservation:True, RMSD:True, included: True 
 
ZN301 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.560 
Given the properties calculated previously, the ligand A.ZN301 will be included in the final model. 
ZN301: conservation:True, RMSD:True, included: True 
 
The new model with the included ligands was saved successfully.

 
Quaternary Structure Annotation of the Template 
 3qmd is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3qmd.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 The target and template sequences are too diverse (seqid: 57.500) to infer a conservation of the oligomeric state 
 Please use the advancend features of the SwissModel Project Mode 
       
 The target structure was calculated as SINGLE CHAIN

Template Selection 
 - Start SMR-Pipeline for:69c3c5b50b73aa9a4b067c796dcc5fea on BC2-cluster at Tue May  7 10:04:15
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skipping oligomeric state prediction due to too many templates for cluster: 1102_1301
 - Warning: Oligomer Prediction was not successfull!

 - Warning: clustersMergedFile not found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:12): model based on new templates
 - Send 12 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                         **
 - building model based on 3qmdA (678-716) was successful 
 -     ************************
 - building model based on 2yu2A (66-465) was successful 
 -                                         ********
 - building model based on 4bbqA (674-801) was successful 
 -    ********************
 - building model based on 3kv5A (47-376) was successful 
 -                                                                **
 - building model based on 1fs1A (1064-1102) was successful 
 -  **************************
 - building model based on 3kv5D (10-451) was successful 
 -                                                                         *****
 - building model based on 1oznA (1211-1300) was successful 
 -                                                                    ***
 - building model based on 3rgzA (1127-1180) was successful 
 -                                                                     **********
 - building model based on 1fs2A (1148-1313) was successful 
 -                                                                   ************
 - building model based on 1p8tA (1103-1302) was not successful go to next best template
 -                                                                   *************
 - building model based on 2bexA (1103-1313) was successful 
 -                                                                       *********
 - building model based on 1fqvM (1171-1329) was successful 
 -                                                                   ***********
 - building model based on 1m9sA (1103-1286) was successful 
 -                                                                ***************
 - building model based on 1fs2A (1064-1316) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:69c3c5b50b73aa9a4b067c796dcc5fea on BC2-cluster at Tue May  7 10:49:35
2013


Template Description
Match Chain SeqId

2yu1: CRYSTAL STRUCTURE OF HJHDM1A COMPLEXED WITH A-KETOGLUTARAT
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

68-465 2yu1A 56%
[Model]

2yu2: CRYSTAL STRUCTURE OF HJHDM1A WITHOUT A-KETOGLUTARATE
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

66-465 2yu2A 55%
[Model]

3pt6: CRYSTAL STRUCTURE OF MOUSE DNMT1(650-1602) IN COMPLEX WITH
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

673-737 3pt6B 40%
[Model]
674-717 3pt6A 55%
[Model]

3swr: STRUCTURE OF HUMAN DNMT1 (601-1600) IN COMPLEX WITH SINEFU
Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

672-716 3swrA 53%
[Model]

3qmg: STRUCTURAL BASIS OF SELECTIVE BINDING OF NON-METHYLATED CPTHE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-717 3qmgA 52%
[Model]

3qmc: STRUCTURAL BASIS OF SELECTIVE BINDING OF NONMETHYLATED CPGTHE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-717 3qmcA 52%
[Model]

3qmi: STRUCTURAL BASIS OF SELECTIVE BINDING OF NON-METHYLATED CP(DNA-ACGT) BY THE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-717 3qmiA 52%
[Model]

3qmd: STRUCTURAL BASIS OF SELECTIVE BINDING OF NONMETHYLATED CPGTHE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-717 3qmdA 52%
[Model]

3qmb: STRUCTURAL BASIS OF SELECTIVE BINDING OF NONMETHYLATED CPGTHE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.06A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

673-717 3qmbA 52%
[Model]

3qmh: STRUCTURAL BASIS OF SELECTIVE BINDING OF NON-METHYLATED CP(DNA-TCGA) BY THE CXXC DOMAIN OF CFP1
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

675-719 3qmhA 50%
[Model]

2kkf: SOLUTION STRUCTURE OF MLL CXXC DOMAIN IN COMPLEX WITH PALINDROMIC CPG DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

672-720 2kkfA 46%
[Model]

2jyi: SOLUTION STRUCTURE OF MLL CXXC DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

672-720 2jyiA 46%
[Model]

4bbq: CRYSTAL STRUCTURE OF THE CXXC AND PHD DOMAIN OF HUMAN LYSINE-SPECIFIC DEMETHYLASE 2A (KDM2A)(FBXL11)
Solved by: X-RAY, Resolution: 2.24A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

674-802 4bbqA 43%
[Model]
674-802 4bbqB 42%
[Model]

2j2s: SOLUTION STRUCTURE OF THE NONMETHYL-CPG-BINDING CXXC DOMAIOF THE LEUKAEMIA-ASSOCIATED MLL HISTONE METHYLTRANSFERASE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

668-721 2j2sA 42%
[Model]

3kv4: STRUCTURE OF PHF8 IN COMPLEX WITH HISTONE H3
Solved by: X-RAY, Resolution: 2.19A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

66-454 3kv4A 40%
[Model]

3k3n: CRYSTAL STRUCTURE OF THE CATALYTIC CORE DOMAIN OF HUMAN PH
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-451 3k3nA 40%
[Model]

2wwu: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PHD FINGER PROTEIN 8
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-450 2wwuA 40%
[Model]

4do0: CRYSTAL STRUCTURE OF HUMAN PHF8 IN COMPLEX WITH DAMINOZIDE
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-450 4do0A 40%
[Model]

3k3o: CRYSTAL STRUCTURE OF THE CATALYTIC CORE DOMAIN OF HUMAN PHCOMPLEXED WITH ALPHA-KETOGLUTARATE
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

76-451 3k3oA 40%
[Model]

3kvb: STRUCTURE OF KIAA1718 JUMONJI DOMAIN IN COMPLEX WITH N- OXALYLGLYCINE
Solved by: X-RAY, Resolution: 2.79A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-451 3kvbA 38%
[Model]

3u78: E67-2 SELECTIVELY INHIBITS KIAA1718, A HUMAN HISTONE H3 LYJUMONJI DEMETHYLASE
Solved by: X-RAY, Resolution: 2.79A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-451 3u78A 38%
[Model]

3kva: STRUCTURE OF KIAA1718 JUMONJI DOMAIN IN COMPLEX WITH ALPHAKETOGLUTARATE
Solved by: X-RAY, Resolution: 2.79A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-451 3kvaA 38%
[Model]

3kv9: STRUCTURE OF KIAA1718 JUMONJI DOMAIN
Solved by: X-RAY, Resolution: 2.79A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-451 3kv9A 38%
[Model]

3pua: PHF2 JUMONJI-NOG-NI(II)
Solved by: X-RAY, Resolution: 2.08A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-450 3puaA 36%
[Model]

3pu3: PHF2 JUMONJI DOMAIN-NOG COMPLEX
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

65-450 3pu3A 36%
[Model]
65-450 3pu3B 36%
[Model]

3pu8: PHF2 JUMONJI-NOG-FE(II) COMPLEX
Solved by: X-RAY, Resolution: 1.94A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-450 3pu8B 36%
[Model]
65-450 3pu8A 36%
[Model]

3ptr: PHF2 JUMONJI DOMAIN
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-450 3ptrB 36%
[Model]

3pus: PHF2 JUMONJI-NOG-NI(II)
Solved by: X-RAY, Resolution: 2.08A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

64-450 3pusA 36%
[Model]
65-450 3pusB 36%
[Model]

1fs1: INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1102 1fs1A 36%
[Model]
1064-1102 1fs1C 36%
[Model]

1ldk: STRUCTURE OF THE CUL1-RBX1-SKP1-F BOXSKP2 SCF UBIQUITIN LIGASE COMPLEX
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1102 1ldkE 36%
[Model]

3kv6: STRUCTURE OF KIAA1718, HUMAN JUMONJI DEMETHYLASE, IN COMPLWITH ALPHA-KETOGLUTARATE
Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-451 3kv6A 33%
[Model]
13-451 3kv6D 34%
[Model]

3kv5: STRUCTURE OF KIAA1718, HUMAN JUMONJI DEMETHYLASE, IN COMPLWITH N-OXALYLGLYCINE
Solved by: X-RAY, Resolution: 2.89A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

10-451 3kv5D 34%
[Model]
11-451 3kv5A 33%
[Model]

2e32: STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BSCFFBS1 UBIQUITIN LIGASE
Solved by: X-RAY, Resolution: 3.52A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1107 2e32C 27%
[Model]
1064-1107 2e32A 27%
[Model]

2ast: CRYSTAL STRUCTURE OF SKP1-SKP2-CKS1 IN COMPLEX WITH A P27 PEPTIDE
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1317 2astB 18%
[Model]
1103-1306 2astB 19%
[Model]
1127-1313 2astB 14%
[Model]
1099-1292 2astB 17%
[Model]
1103-1259 2astB 18%
[Model]
1171-1329 2astB 22%
[Model]
1214-1309 2astB 26%
[Model]

1fqv: INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1317 1fqvM 18%
[Model]
1064-1317 1fqvI 18%
[Model]
1064-1317 1fqvE 18%
[Model]
1064-1317 1fqvA 18%
[Model]
1064-1317 1fqvO 18%
[Model]
1064-1317 1fqvK 18%
[Model]
1064-1317 1fqvG 18%
[Model]
1064-1317 1fqvC 18%
[Model]
1103-1306 1fqvM 19%
[Model]
1103-1306 1fqvI 19%
[Model]
1103-1306 1fqvE 19%
[Model]
1103-1306 1fqvA 19%
[Model]
1103-1306 1fqvO 19%
[Model]
1103-1306 1fqvK 19%
[Model]
1103-1306 1fqvG 19%
[Model]
1103-1306 1fqvC 19%
[Model]
1127-1313 1fqvM 14%
[Model]
1127-1313 1fqvI 14%
[Model]
1127-1313 1fqvE 14%
[Model]
1127-1313 1fqvA 14%
[Model]
1127-1313 1fqvO 14%
[Model]
1127-1313 1fqvK 14%
[Model]
1127-1313 1fqvG 14%
[Model]
1127-1313 1fqvC 14%
[Model]
1099-1292 1fqvM 17%
[Model]
1099-1292 1fqvI 17%
[Model]
1099-1292 1fqvE 17%
[Model]
1099-1292 1fqvA 17%
[Model]
1099-1292 1fqvO 17%
[Model]
1099-1292 1fqvK 17%
[Model]
1099-1292 1fqvG 17%
[Model]
1099-1292 1fqvC 17%
[Model]
1103-1259 1fqvM 18%
[Model]
1103-1259 1fqvI 18%
[Model]
1103-1259 1fqvE 18%
[Model]
1103-1259 1fqvA 18%
[Model]
1103-1259 1fqvO 18%
[Model]
1103-1259 1fqvK 18%
[Model]
1103-1259 1fqvG 18%
[Model]
1103-1259 1fqvC 18%
[Model]
1171-1329 1fqvM 22%
[Model]
1171-1329 1fqvI 22%
[Model]
1171-1329 1fqvE 22%
[Model]
1171-1329 1fqvA 22%
[Model]
1171-1329 1fqvO 22%
[Model]
1171-1329 1fqvK 22%
[Model]
1171-1329 1fqvG 22%
[Model]
1171-1329 1fqvC 22%
[Model]
1214-1309 1fqvM 26%
[Model]
1214-1309 1fqvI 26%
[Model]
1214-1309 1fqvE 26%
[Model]
1214-1309 1fqvA 26%
[Model]
1214-1309 1fqvO 26%
[Model]
1214-1309 1fqvK 26%
[Model]
1214-1309 1fqvG 26%
[Model]
1214-1309 1fqvC 26%
[Model]

2ass: CRYSTAL STRUCTURE OF THE SKP1-SKP2-CKS1 COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1317 2assB 18%
[Model]
1103-1306 2assB 19%
[Model]
1127-1313 2assB 14%
[Model]
1099-1292 2assB 17%
[Model]
1103-1259 2assB 18%
[Model]
1171-1329 2assB 22%
[Model]
1214-1309 2assB 26%
[Model]

1fs2: INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1316 1fs2A 19%
[Model]
1064-1316 1fs2C 19%
[Model]
1124-1314 1fs2A 16%
[Model]
1124-1314 1fs2C 16%
[Model]
1103-1294 1fs2A 16%
[Model]
1103-1294 1fs2C 16%
[Model]
1148-1313 1fs2A 23%
[Model]
1148-1313 1fs2C 23%
[Model]
1099-1261 1fs2A 17%
[Model]
1099-1261 1fs2C 17%
[Model]
1103-1240 1fs2A 18%
[Model]
1103-1240 1fs2C 18%
[Model]
1172-1317 1fs2A 21%
[Model]
1172-1317 1fs2C 21%
[Model]
1213-1313 1fs2A 25%
[Model]
1213-1313 1fs2C 25%
[Model]

3l2o: STRUCTURE-BASED MECHANISM OF DIMERIZATION-DEPENDENT UBIQUITINATION BY THE SCFFBX4 UBIQUITIN LIGASE
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1108 3l2oB 24%
[Model]

3n9o: CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K9AND NOG
Solved by: X-RAY, Resolution: 2.31A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

14-451 3n9oA 23%
[Model]

3zyj: NETRING1 IN COMPLEX WITH NGL1
Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1265-1301 3zyjC 14%
[Model]
1265-1301 3zyjA 14%
[Model]
1126-1182 3zyjC 23%
[Model]
1126-1182 3zyjA 23%
[Model]

3n9p: CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3K27ME2 PEPTIDE
Solved by: X-RAY, Resolution: 2.39A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

15-447 3n9pA 23%
[Model]

3n9m: CEKDM7A FROM C.ELEGANS, ALONE
Solved by: X-RAY, Resolution: 2.49A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

14-446 3n9mA 23%
[Model]
14-447 3n9mC 23%
[Model]

3puq: CEKDM7A FROM C.ELEGANS, COMPLEX WITH ALPHA-KG
Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

14-448 3puqA 23%
[Model]
15-448 3puqC 23%
[Model]

3n9l: CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE AND N
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

15-447 3n9lA 23%
[Model]

3n9n: CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3K9ME2 PEPTIDE
Solved by: X-RAY, Resolution: 2.39A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

15-447 3n9nA 23%
[Model]

3rgz: STRUCTURAL INSIGHT INTO BRASSINOSTEROID PERCEPTION BY BRI1
Solved by: X-RAY, Resolution: 2.28A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1127-1180 3rgzA 24%
[Model]
176-185 3rgzA 40%
[Model]
1287-1299 3rgzA 23%
[Model]

3n9q: CEKDM7A FROM C.ELEGANS, COMPLEX WITH H3K4ME3 PEPTIDE, H3K2AND NOG
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

15-446 3n9qA 23%
[Model]

3kj4: STRUCTURE OF RAT NOGO RECEPTOR BOUND TO 1D9 ANTAGONIST ANT
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1145-1304 3kj4A 22%
[Model]
1145-1304 3kj4D 22%
[Model]

3oja: CRYSTAL STRUCTURE OF LRIM1/APL1C COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1211-1299 3ojaA 22%
[Model]

2z62: CRYSTAL STRUCTURE OF THE TV3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1266-1302 2z62A 22%
[Model]

3pur: CEKDM7A FROM C.ELEGANS, COMPLEX WITH D-2-HG
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

15-447 3purA 23%
[Model]
15-448 3purC 22%
[Model]

3zyn: CRYSTAL STRUCTURE OF THE N-TERMINAL LEUCINE RICH REPEATS OLIGAND-3
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1300 3zynA 21%
[Model]
1212-1301 3zynB 18%
[Model]
1126-1302 3zynB 21%
[Model]
1266-1301 3zynA 22%
[Model]

2z65: CRYSTAL STRUCTURE OF THE HUMAN TLR4 TV3 HYBRID-MD-2- ERITORAN COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1266-1302 2z65A 22%
[Model]
1266-1302 2z65B 22%
[Model]

2wqx: INLB321_4R: S199R, D200R, G206R, A227R, C242A MUTANT OF THLISTERIA MONOCYTOGENES INLB INTERNALIN DOMAIN
Solved by: X-RAY, Resolution: 2.03A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1210-1301 2wqxB 22%
[Model]
1210-1301 2wqxA 22%
[Model]

4aw4: ENGINEERED VARIANT OF LISTERIA MONOCYTOGENES INLB INTERNALWITH AN ADDITIONAL LEUCINE RICH REPEAT INSERTED
Solved by: X-RAY, Resolution: 1.93A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1104-1302 4aw4B 17%
[Model]
1104-1302 4aw4C 17%
[Model]
1103-1302 4aw4A 18%
[Model]
1103-1286 4aw4B 21%
[Model]
1103-1286 4aw4C 21%
[Model]
1124-1305 4aw4B 21%
[Model]
1124-1305 4aw4C 21%
[Model]
1124-1306 4aw4A 22%
[Model]
1125-1287 4aw4A 22%
[Model]

3j0a: HOMOLOGY MODEL OF HUMAN TOLL-LIKE RECEPTOR 5 FITTED INTO AMICROSCOPY SINGLE PARTICLE RECONSTRUCTION
Solved by: X-RAY, Resolution: 26.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1302 3j0aA 17%
[Model]
1211-1302 3j0aB 21%
[Model]

2ell: SOLUTION STRUCTURE OF THE LEUCINE RICH REPEAT OF HUMAN ACIRICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER B
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1148-1302 2ellA 21%
[Model]

1wwl: CRYSTAL STRUCTURE OF CD14
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1302 1wwlA 16%
[Model]
1148-1302 1wwlB 22%
[Model]
1147-1302 1wwlA 21%
[Model]

2rr6: SOLUTION STRUCTURE OF THE LEUCINE RICH REPEAT OF HUMAN ACIRICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER B
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1148-1302 2rr6A 21%
[Model]

1otn: CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
Solved by: X-RAY, Resolution: 1.97A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1124-1302 1otnA 21%
[Model]

2y5q: LISTERIA MONOCYTOGENES INLB (INTERNALIN B) RESIDUES 36-392
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1123-1302 2y5qA 21%
[Model]
1126-1302 2y5qA 21%
[Model]

1h6t: INTERNALIN B: CRYSTAL STRUCTURE OF FUSED N-TERMINAL DOMAIN
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1302 1h6tA 19%
[Model]
1124-1302 1h6tA 21%
[Model]

2ovr: STRUCTURE OF THE SKP1-FBW7-CYCLINEDEGN COMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1064-1106 2ovrB 21%
[Model]

2xot: CRYSTAL STRUCTURE OF NEURONAL LEUCINE RICH REPEAT PROTEIN
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1302 2xotA 20%
[Model]

2ovq: STRUCTURE OF THE SKP1-FBW7-CYCLINEDEGC COMPLEX
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1063-1106 2ovqB 20%
[Model]

1m9s: CRYSTAL STRUCTURE OF INTERNALIN B (INLB), A LISTERIA MONOCYTOGENES VIRULENCE PROTEIN CONTAINING SH3-LIKE DOMAINS.
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1126-1300 1m9sA 19%
[Model]
1103-1286 1m9sA 22%
[Model]
1126-1302 1m9sA 20%
[Model]

2ovp: STRUCTURE OF THE SKP1-FBW7 COMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1062-1107 2ovpB 20%
[Model]

2uzy: STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, CRYSTAL FORM II
Solved by: X-RAY, Resolution: 4.0A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1302 2uzyA 19%
[Model]
1103-1302 2uzyC 19%
[Model]

2a0z: THE MOLECULAR STRUCTURE OF TOLL-LIKE RECEPTOR 3 LIGAND BINDING DOMAIN
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1104-1315 2a0zA 15%
[Model]
1127-1301 2a0zA 16%
[Model]
1125-1289 2a0zA 17%
[Model]
1141-1247 2a0zA 17%
[Model]
1123-1222 2a0zA 12%
[Model]
1126-1302 2a0zA 19%
[Model]

2wqv: INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: RHOMBOHEDRAL CRYSTAL FORM
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1104-1302 2wqvB 19%
[Model]

3rgx: STRUCTURAL INSIGHT INTO BRASSINOSTEROID PERCEPTION BY BRI1
Solved by: X-RAY, Resolution: 2.47A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1182 3rgxA 17%
[Model]
1210-1300 3rgxA 18%
[Model]
1210-1280 3rgxA 27%
[Model]
1103-1300 3rgxA 12%
[Model]
1229-1302 3rgxA 19%
[Model]

4fmz: CRYSTAL STRUCTURE OF AN INTERNALIN (INLF) FROM LISTERIA MOSTR. 4B F2365 AT 1.91 A RESOLUTION
Solved by: X-RAY, Resolution: 1.91A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1127-1302 4fmzA 17%
[Model]
1126-1300 4fmzA 19%
[Model]

3rg1: CRYSTAL STRUCTURE OF THE RP105/MD-1 COMPLEX
Solved by: X-RAY, Resolution: 2.91A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1303 3rg1M 16%
[Model]
1124-1304 3rg1N 17%
[Model]
1124-1304 3rg1J 17%
[Model]
1124-1304 3rg1F 17%
[Model]
1124-1304 3rg1B 17%
[Model]
1126-1303 3rg1A 16%
[Model]
1124-1301 3rg1E 17%
[Model]
1126-1303 3rg1E 16%
[Model]
1144-1301 3rg1N 17%
[Model]
1144-1301 3rg1J 17%
[Model]
1144-1301 3rg1F 17%
[Model]
1144-1301 3rg1B 17%
[Model]
1124-1302 3rg1M 16%
[Model]
1125-1301 3rg1A 17%
[Model]
1103-1300 3rg1M 16%
[Model]
1126-1287 3rg1E 19%
[Model]
1104-1287 3rg1A 16%
[Model]
1126-1312 3rg1M 19%
[Model]

2je0: CRYSTAL STRUCTURE OF PP32
Solved by: X-RAY, Resolution: 2.69A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1148-1299 2je0F 19%
[Model]
1148-1299 2je0B 19%
[Model]
1148-1299 2je0E 19%
[Model]
1148-1299 2je0A 19%
[Model]
1148-1299 2je0D 19%
[Model]
1148-1299 2je0C 19%
[Model]

2p1o: MECHANISM OF AUXIN PERCEPTION BY THE TIR1 UBIQUITIN LIGASE
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1323 2p1oB 17%
[Model]
1065-1095 2p1oB 22%
[Model]
1112-1315 2p1oB 17%
[Model]
1126-1303 2p1oB 17%
[Model]
1133-1329 2p1oB 14%
[Model]
1112-1268 2p1oB 16%
[Model]
1124-1240 2p1oB 16%
[Model]
1275-1314 2p1oB 20%
[Model]
1273-1298 2p1oB 26%
[Model]
1219-1313 2p1oB 16%
[Model]
1103-1194 2p1oB 16%
[Model]
1171-1329 2p1oB 12%
[Model]
1116-1314 2p1oB 15%
[Model]
1103-1195 2p1oB 13%
[Model]
1102-1313 2p1oB 19%
[Model]

1d0b: INTERNALIN B LEUCINE RICH REPEAT DOMAIN
Solved by: X-RAY, Resolution: 1.86A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1126-1301 1d0bA 20%
[Model]
1103-1301 1d0bA 19%
[Model]
1144-1306 1d0bA 19%
[Model]

3ula: CRYSTAL STRUCTURE OF THE TV3 MUTANT F63W-MD-2-ERITORAN COM
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1210-1304 3ulaC 19%
[Model]
1210-1304 3ulaA 19%
[Model]

2jqd: STRUCTURE OF THE LEUCINE-RICH REPEAT DOMAIN OF LANP
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1148-1302 2jqdA 20%
[Model]
1123-1276 2jqdA 19%
[Model]

2p1p: MECHANISM OF AUXIN PERCEPTION BY THE TIR1 UBIQUITIN LIGASE
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1323 2p1pB 17%
[Model]
1065-1095 2p1pB 22%
[Model]
1112-1315 2p1pB 17%
[Model]
1126-1303 2p1pB 17%
[Model]
1133-1329 2p1pB 14%
[Model]
1112-1268 2p1pB 16%
[Model]
1124-1240 2p1pB 16%
[Model]
1275-1314 2p1pB 20%
[Model]
1273-1298 2p1pB 26%
[Model]
1219-1313 2p1pB 16%
[Model]
1103-1194 2p1pB 16%
[Model]
1171-1329 2p1pB 12%
[Model]
1116-1314 2p1pB 15%
[Model]
1103-1195 2p1pB 13%
[Model]
1102-1313 2p1pB 19%
[Model]

1oto: CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
Solved by: X-RAY, Resolution: 1.96A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1306 1otoA 20%
[Model]
1103-1300 1otoA 19%
[Model]

2p1n: MECHANISM OF AUXIN PERCEPTION BY THE TIR1 UBIQUTIN LIGASE
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1323 2p1nB 17%
[Model]
1103-1323 2p1nE 17%
[Model]
1065-1095 2p1nB 22%
[Model]
1065-1095 2p1nE 22%
[Model]
1112-1315 2p1nB 17%
[Model]
1112-1315 2p1nE 17%
[Model]
1126-1303 2p1nB 17%
[Model]
1126-1303 2p1nE 17%
[Model]
1133-1329 2p1nB 14%
[Model]
1133-1329 2p1nE 14%
[Model]
1112-1268 2p1nB 16%
[Model]
1112-1268 2p1nE 16%
[Model]
1124-1240 2p1nB 16%
[Model]
1124-1240 2p1nE 16%
[Model]
1275-1314 2p1nB 20%
[Model]
1275-1314 2p1nE 20%
[Model]
1273-1298 2p1nB 26%
[Model]
1273-1298 2p1nE 26%
[Model]
1219-1313 2p1nB 16%
[Model]
1219-1313 2p1nE 16%
[Model]
1103-1194 2p1nB 16%
[Model]
1103-1194 2p1nE 16%
[Model]
1171-1329 2p1nB 12%
[Model]
1171-1329 2p1nE 12%
[Model]
1116-1314 2p1nB 15%
[Model]
1116-1314 2p1nE 15%
[Model]
1103-1195 2p1nB 13%
[Model]
1103-1195 2p1nE 13%
[Model]
1102-1313 2p1nB 19%
[Model]
1102-1313 2p1nE 19%
[Model]

2je1: THE CRYSTAL STRUCTURE OF THE TUMOR SUPRESSOR PROTEIN PP32 (ANP32A):STRUCTURAL INSIGHTS INTO THE ANP32 FAMILY OF PROTEINS
Solved by: X-RAY, Resolution: 2.69A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1148-1299 2je1A 19%
[Model]
1148-1299 2je1D 19%
[Model]
1148-1299 2je1C 19%
[Model]
1148-1299 2je1B 19%
[Model]

4fho: CRYSTAL STRUCTURE OF AN INTERNALIN C2 (INLC2) FROM LISTERIMONOCYTOGENES STR. 4B F2365 AT 1.90 A RESOLUTION
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1306 4fhoB 18%
[Model]
1103-1306 4fhoA 19%
[Model]
1103-1299 4fhoB 16%
[Model]
1126-1302 4fhoB 19%
[Model]
1126-1302 4fhoA 19%
[Model]

3ul7: CRYSTAL STRUCTURE OF THE TV3 MUTANT F63W
Solved by: X-RAY, Resolution: 2.37A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1301 3ul7A 18%
[Model]

1otm: CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
Solved by: X-RAY, Resolution: 1.93A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1125-1300 1otmA 20%
[Model]
1123-1306 1otmA 20%
[Model]
1144-1306 1otmA 18%
[Model]

3ul8: CRYSTAL STRUCTURE OF THE TV3 MUTANT V134L
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1209-1300 3ul8A 18%
[Model]

2uzx: STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I
Solved by: X-RAY, Resolution: 2.8A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1302 2uzxC 18%
[Model]
1103-1302 2uzxA 18%
[Model]

2bnh: PORCINE RIBONUCLEASE INHIBITOR
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1103-1316 2bnhA 18%
[Model]
1212-1316 2bnhA 23%
[Model]
1102-1289 2bnhA 19%
[Model]
1103-1311 2bnhA 17%
[Model]
1103-1271 2bnhA 14%
[Model]
1103-1316 2bnhA 18%
[Model]
1103-1313 2bnhA 17%
[Model]
1102-1313 2bnhA 17%
[Model]
1213-1274 2bnhA 27%
[Model]
1128-1158 2bnhA 19%
[Model]
1102-1314 2bnhA 15%