SWISS-MODEL Repository - Model Details

Model Overview
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1
908

Sequence
UniProt Q9VM71
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q9VM71: 7227.FBpp0078973

Domain
Link to: [ InterPro ]
XRN_N

Model 3D Structure
Model information:
Modelled residue range: 1 to 415
Based on template: [ 3fqd ]  
Sequence Identity [%]: 52%
Model date: 2014-07-17
Revision date: 2014-07-15

Quaternary structure information: [details]
Template (3fqd): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1         MGVPAF FRWLSRKYPS VIIECNENKQ VDADTGRNIY EDPTLPNPNG
3fqdA     0     as--xgvpal frllsrkfak vitpvieapt eklpdgteie pdlslpnpng
                                                                      
TARGET                 hhh hhhhhhh    sssss      sss   sss            
3fqdA                  hhh hhhhhhh    sssss      sss   sss            


TARGET    47    IEFDNLYLDM NGIIHPCTHP EDKPAPKNED EMMVAIFECI DRLFGIVRPR
3fqdA     47    vecdnlyldx ngivhpcshp edrpapeted exxvavfeyt drilaxvrpr
                                                                      
TARGET             sssssss hhhhhhh            hh hhhhhhhhhh hhhhhhh   
3fqdA              sssssss    hhhh            hh hhhhhhhhhh hhhhhhh   


TARGET    97    KLLYMAIDGV APRAKMNQQR SRRFRAAKET TEKRLEIARI REELLSRGCK
3fqdA     97    qllfiaidgv aprakxnqqr srrfrssrea alkeeelqaf ieeakqqgip
                                                                      
TARGET          sssssss      hhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhh   
3fqdA           sssssss      hhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhh  s


TARGET    147   LPPEKEKGEH FDSNCITPGT PFMDRLSKCL HYFVHDRQNN NPAWKGIKVI
3fqdA     147   idenatkkks wdsncitpgt pfxdtlaksl ryyiinklns dpcwrnvrfi
                                                                      
TARGET            hhhh                 hhhhhhhhh hhhhhhhh          sss
3fqdA           sshhhh                 hhhhhhhhh hhhhhhhh          sss


TARGET    197   LSDANVPGEG EHKIMDYIRK QRAQPDHDPN TQHVLCGADA DLIMLGLATH
3fqdA     197   lsdasvpgeg ehkixefirs qrvkpeydpn thhvvyglda dlixlglath
                                                                      
TARGET          ss       h hhhhhhhhhh hh          sssss     hhhhhhhh  
3fqdA           ss       h hhhhhhhhhh hh          sssss     hhhhhhhh  


TARGET    247   EPNFTIIREE FLPNKPRPCD ICNGFGHEMD KCVGLGATAP TSANFKPDVP
3fqdA     247   ephfrvlred vfkeerl--- ---gikrldd k--------- ----------
                                                                      
TARGET            ssssss         hhhh hh     hhh hhhhhhhhh    hhhhhhhh
3fqdA             ssssssss    hhh          sss                        


TARGET    297   IGAEVKFIFV RLSVLREYLK QTLEMPNLPF EYSFERALDD WVFMCFFVGN
3fqdA     291   -----pfiwl nvsilreyle velyvpnlpf pfdleraidd wvffiffvgn
                                                                      
TARGET          hh    ssss sshhhhhhhh hhh           hhhhhhh hhhhhhh   
3fqdA                sssss sshhhhhhhh hhh           hhhhhhh hhhhhhh   


TARGET    347   DFLPHLPSLE IREGAVDRLV ELYKKCVYKT RGYLTDSGDV NLDRVQLIMT
3fqdA     336   dflphlpsld irdgaverlt eiwraslphx ggyltldgsv nlaraevils
                                                                      
TARGET                         hhhhhh hhhhhhh                hhhhhhhhh
3fqdA                          hhhhhh hhhhhhhhh              hhhhhhhhh


TARGET    397   DLGNAEDQIF KSRQRREEQ  ---------- ---------- ----------
3fqdA     386   avgnqeddif krlkqqedrr ndtvrlyepg yreryyeqkf hispdepeki
                                                                      
TARGET          hhhhhhhhhh hhhhhhh                                    
3fqdA           hhhhhhhhhh hhhhhhh                hhhhhhhh         hhh


TARGET          ---------- ---------- ---------- ---------- ----------
3fqdA     611   reavkhyvhg lcwvllyyyq gcpswtwyyp yhyapfaadf kdlasidvkf
                                                                      
TARGET                                                                
3fqdA           hhhhhhhhhh hhhhhhhh                                   


TARGET          ---------- ---------- ---------- ---------- ----------
3fqdA     661   elnqpfkpye qllgvlpaas knnlpeklqt lxtdenseii dfypenftid
                                                                      
TARGET                                                                
3fqdA                  hhh hhhh            hhhhh h                 sss


TARGET          ---------- ---------- ---------- ---------- ----------
3fqdA     711   lngkkfewqg vallpfiden rllnavskiy pqlteeeskr nedgstllfi
                                                                      
TARGET                                                                
3fqdA                      sss     hh hhhhhhhhhh h   hhhhhh      sssss


TARGET          ---------- ---------- ---------- ---------- ----------
3fqdA     761   sehhpxfsel vkqlyskkrq gkplklsgkx ahglfgkvnt ndsvipnvsv
                                                                      
TARGET                                                                
3fqdA           ss   hhhhh hhhh          sss          ssss            


TARGET          ---------- ---------- ---------- ---------- ----------
3fqdA     811   qcpidvtsad alqkygsidd nqsislvfev pkshfvhksx llrgvkxpnr
                                                                      
TARGET                                                                
3fqdA                   hh hhhh        ssssssss                       


TARGET          ---------- ----                                       
3fqdA     861   vltpedinqv raer                                       
                                                                      
TARGET                                                                
3fqdA              hhhhhhh hhh                                        



Quality


Template's ligands section
Template without ligands.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3fqd is annotated as HETERO DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3fqd.pdb1.gz

Quaternary Structure Modelling of the Target Protein
3fqd_1


Template Selection
 - Start SMR-Pipeline for:b8f92b686080314929298d254b0b2566 on BC2-cluster at Wed Jul 16 22:19:27
2014 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange - make sure all DBs are sync'ed correctly
 - No template with B found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 - *************************************
 - building model based on 3fqdA (1-415) was successful 
 -                                           *****************
 - building model based on 2y35A (476-664) was successful 
 -                                           *************************
 - building model based on 3fqdA (479-761) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:b8f92b686080314929298d254b0b2566 on BC2-cluster at Wed Jul 16 22:21:44
2014 



no data available!
Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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