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SWISS-MODEL Repository - Model Details

Model Overview

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459

Sequence

UniProt

Q9VNS0

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

Maelstrom

Model 3D Structure

	Model information:
	Modelled residue range:	3 to 58
	Based on template:	[ 1cg7 ]
	Sequence Identity [%]:	25%
	Model date:	2012-10-30
	Revision date:	2012-10-15

Quaternary structure information:	[details]
Template (1cg7): MONOMER Model built: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: none. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2012-10-15. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1                           PKK-HSGFMM FVNEWRNRN- AEGRRMTLAQ
1cg7A     1     mvtprepkkr ttrkkkdpna pkralsaymf fanenrdivr senpditfgq
                                                                      
TARGET                                         h hhhhhhh              
1cg7A                                       hhhh hhhhhhhhhh hh        


TARGET    29    AVSHCGTIWE KMNTQQRGPY NSGGKDAN - ---------- ---       
1cg7A     51    vgkklgekwk altpeekqpy eakaqadkkr yesekelyna tla       
                                                                      
TARGET          hhhhhhhhh    hhhhhhhh hhhhhhhh                        
1cg7A           hhhhhhhhh    hhhhhhhh hhhhhhhhhh hhhhhhhhhh hh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Template without ligands. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1cg7 is annotated as MONOMER 
 The template structure (1cg7) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 The target and template sequences are too diverse (seqid: 25.862) to infer a conservation of the oligomeric state 
 Please use the advancend features of the SwissModel Project Mode 
       
 The target structure was calculated as SINGLE CHAIN

Template Selection

 - Start SMR-Pipeline for:85205f0eb507ae24831df9e782c33a89 on BC2-cluster at Tue Oct 30 21:15:32
2012 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with A found
 - No template with C found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Selected template(s): no changes compared to previous version of the Repository:
 -  Template: 1cg7A (3-58) Sequence Identity: 25.862
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -  **********
 - building model based on 1cg7A (3-58) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:85205f0eb507ae24831df9e782c33a89 on BC2-cluster at Tue Oct 30 21:22:53
2012

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

1cg7: HMG PROTEIN NHP6A FROM SACCHAROMYCES CEREVISIAE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1cg7A

26%

1j5n: SOLUTION STRUCTURE OF THE NON-SEQUENCE-SPECIFIC HMGB PROTEIN NHP6A IN COMPLEX WITH SRY DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1j5nA

26%

1lwm: SOLUTION STRUCTURE OF THE SEQUENCE-NON-SPECIFIC HMGB PROTEIN NHP6A
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1lwmA

26%

2lhj: NMR STRUCTURE OF THE HIGH MOBILITY GROUP PROTEIN-LIKE PROTFROM BABESIA BOVIS T2BO (BABOA.00841.A)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

2lhjA

23%

1hsn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hsnA

22%

1nhm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1nhmA

22%

2yqi: SOLUTION STRUCTURE OF THE SECOND HMG-BOX DOMAIN FROM HIGH MOBILITY GROUP PROTEIN B3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

2yqiA

22%

1hsm: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hsmA

22%

1hme: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hmeA

22%

2gzk: STRUCTURE OF A COMPLEX OF TANDEM HMG BOXES AND DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	3-58	2gzkA	16%	>target ----PKK-HSGFMMFVNEWRNR-NAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN------------------------------------------------------------------------------------------------- >2gzkA VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK [Model]
	2-58	2gzkA	22%	>target ---------------------------------------------------------------------------------------APKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN------------- >2gzkA VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK [Model]

1j3d: SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HMGB2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1j3dA

22%

1hmf: STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hmfA

22%

1nhn: THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1nhnA

22%

1j3c: SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE HMGB2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1j3cA

21%

2e6o: SOLUTION STRUCTURE OF THE HMG BOX DOMAIN FROM HUMAN HMG-BOTRANSCRIPTION FACTOR 1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

2e6oA

21%

2yrq: SOLUTION STRUCTURE OF THE TANDEM HMG BOX DOMAIN FROM HUMANHIGH MOBILITY GROUP PROTEIN B1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	3-58	2yrqA	17%	>target ---------------PKK-HSGFMMFVNEWRNRNAEGR---RMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------------------------------------------------------------------------------------------- >2yrqA GSSGSSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG [Model]
	3-58	2yrqA	21%	>target -----------------------------------------------------------------------------------------------------PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >2yrqA GSSGSSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG [Model]

1v63: SOLUTION STRUCTURE OF THE 6TH HMG BOX OF MOUSE UBF1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1v63A

20%

1e7j: HMG-D COMPLEXED TO A BULGE DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1e7jA

19%

2crj: SOLUTION STRUCTURE OF THE HMG DOMAIN OF MOUSE HMG DOMAIN PROTEIN HMGX2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

2crjA

19%

1hma: THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1hmaA

19%

1qrv: CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Solved by: X-RAY, Resolution: 99.9A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	3-58	1qrvB	19%	>target --PKK-HSGFMMFVNEWRNR-NAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN------------- >1qrvB DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEAN [Model]
	3-58	1qrvA	19%	>target ---PKK-HSGFMMFVNEWRNR-NAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >1qrvA SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEANG [Model]

2cs1: SOLUTION STRUCTURE OF THE HMG DOMAIN OF HUMAN DNA MISMATCHREPAIR PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

2cs1A

19%

2cto: SOLUTION STRUCTURE OF THE HMG BOX LIKE DOMAIN FROM HUMAN HYPOTHETICAL PROTEIN FLJ14904
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

1-67

2ctoA

18%

2eqz: SOLUTION STRUCTURE OF THE FIRST HMG-BOX DOMAIN FROM HIGH MOBILITY GROUP PROTEIN B3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

2eqzA

18%

2lef: LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR, 12 STRUCTURES
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

6-59

2lefA

18%

1ckt: CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN- MODIFIED DNA DUPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1cktA

17%

1j3x: SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HMGB2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1j3xA

17%

3nm9: HMGD(M13A)-DNA COMPLEX
Solved by: X-RAY, Resolution: 2.85A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58	3nm9G	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9G SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]
3-58	3nm9D	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9D SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]
3-58	3nm9P	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9P SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]
3-58	3nm9M	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9M SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]
3-58	3nm9A	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9A SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]
3-58	3nm9J	17%	>target ---PKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN-------------- >3nm9J SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEANG [Model]

1wgf: SOLUTION STRUCTURE OF THE 4TH HMG-BOX OF MOUSE UBF1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1wgfA

16%

1aab: NMR STRUCTURE OF RAT HMG1 HMGA FRAGMENT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1aabA

16%

2co9: SOLUTION STRUCTURE OF THE HMG_BOX DOMAIN OF THYMUS HIGH MOBILITY GROUP BOX PROTEIN TOX FROM MOUSE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

2co9A

16%

1i11: SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN, SOX-5 HMG BOFROM MOUSE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

4-58

1i11A

16%

1wz6: SOLUTION STRUCTURE OF THE HMG_BOX DOMAIN OF MURINE BOBBY SOX HOMOLOG
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

1wz6A

16%

2le4: SOLUTION STRUCTURE OF THE HMG BOX DNA-BINDING DOMAIN OF HUCELL TRANSCRIPTION FACTOR SOX2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-59

2le4A

16%

3u2b: STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

3u2bC

16%

1o4x: TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 ANDSOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1o4xB

16%

2yul: SOLUTION STRUCTURE OF THE HMG BOX OF HUMAN TRANSCRIPTION FACTOR SOX-17
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-59

2yulA

15%

2d7l: SOLUTION STRUCTURE OF THE HMG BOX DOMAIN FROM HUMAN WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

2d7lA

15%

1wxl: SOLUTION STRUCTURE OF THE HMG-BOX DOMAIN IN THE SSRP1 SUBUNIT OF FACT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1wxlA

15%

1gt0: CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-59

1gt0D

15%

1hrz: THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hrzA

14%

1j46: 3D SOLUTION NMR STRUCTURE OF THE WILD TYPE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TODNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

4-59

1j46A

14%

1j47: 3D SOLUTION NMR STRUCTURE OF THE M9I MUTANT OF THE HMG-BOXDOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

4-59

1j47A

14%

3fgh: HUMAN MITOCHONDRIAL TRANSCRIPTION FACTOR A BOX B
Solved by: X-RAY, Resolution: 1.35A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

3-58

3fghA

14%

1k99: SOLUTION STRUCTURE OF THE FIRST HMG BOX IN HUMAN UPSTREAM BINDING FACTOR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1k99A

14%

1hry: THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1hryA

14%

3f27: STRUCTURE OF SOX17 BOUND TO DNA
Solved by: X-RAY, Resolution: 2.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

4-58

3f27D

14%

3tmm: TFAM IMPOSES A U-TURN ON MITOCHONDRIAL DNA
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	2-58	3tmmA	15%	>target ------APKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN---------------------------------------------------------------------------------------------------------------------------------- >3tmmA SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKK [Model]
	6-58	3tmmA	13%	>target --------------------------------------------------------------------------------------------------------------------HSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN----------------------------- >3tmmA SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQ---EAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKK [Model]

3tq6: CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TRANSCRIPTION FACOR MTTFA, BOUND TO THE LIGHT STRAND PROMOTER LSP
Solved by: X-RAY, Resolution: 2.45A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58	3tq6B	15%	>target -----APKK-HSGFMMFVNEWRNR-NAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN------------------------------------------------------------------------------------------------------------------------------ >3tq6B SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRR [Model]
3-57	3tq6B	16%	>target ---------------------------------------------------------------------------------------------------------------PKK-HSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDA-------------------------- >3tq6B SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF---QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRR [Model]
2-58	3tq6A	15%	>target -----APKK-HSGFMMFVNEWRNRN-AEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN---------------------------------------------------------------------------------------------------------------------------------- >3tq6A SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKK [Model]
6-58	3tq6A	13%	>target -------------------------------------------------------------------------------------------------------------------HSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPYNSGGKDAN----------------------------- >3tq6A SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQ---EAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKK [Model]

1v64: SOLUTION STRUCTURE OF THE 3RD HMG BOX OF MOUSE UBF1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-58

1v64A

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.