SWISS-MODEL Repository 
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SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 1 FRQQSSTN TGPKGVVKDW QRFKQLEAER RDETERQRLA LAKKLTITAT
1a0rP 13 fegqas-h tgpkgvindw rkfk-lesef srkmsvqeye lihk------
TARGET hhhhhhhh hhh hhhhh hh sss
1a0rP hhhhhhhh hhh hhhhh hh
TARGET 49 TSAEDEERKR QEELDAELDE LMSEDFLQQY QKQRMAEMLR QTGHHQQFGQ
1a0rP 83 ----dke--- ---------- --denclrky rrqcmqdmhq klsfgprygf
TARGET sss hhhh hhhhhhhhhh hh
1a0rP hhhhhhh hhhhhhhhhh hh
TARGET 99 VQQLTSHEEF LACVEQENKH TTIIIHIYER QLAACATLNK CLDSLASDYP
1a0rP 114 vyelesgeqf letiekeqki ttivvhiyed gikgcdalns sliclaaeyp
TARGET sss hhhh hhhhh sssssss hhhhhh hhhhhhhh
1a0rP sss hhh hhhhh sssssss hhhhhh hhhhhhhh
TARGET 149 SIKFAKICSS VAGMSRDFRT KGLPALLVYK AQAVIGNFVR LTDDLSDDFF
1a0rP 164 mvkfckikas ntgagdrfss dvlptllvyk ggellsnfis vteqlaeeff
TARGET sssssssh h sssssss ssssssss
1a0rP sssssssh h sssssss ssssssss
TARGET 199 ASDVESFLIE HGIIVDR
1a0rP 214 tgdvesflne ygllpek-
TARGET hhhhhhhh
1a0rP hhhhhhhh
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
1a0r is annotated as HETERO TRIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1a0r.pdb1.gz
Quaternary Structure Modelling of the Target Protein
1a0r_1
Template Selection
- Start SMR-Pipeline for:2123fe68a859d25e47420d40abdfedc0 on BC2-cluster at Thu Feb 21 22:56:07
2013
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
FATAL - No A3m found
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- No template with B found
- No template with G found
- No template with A found
- No template with B found
- No template with B found
- No template with G found
- No template with A found
- No template with B found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:1): model based on new templates
- Send 1 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- **************************************************************
- building model based on 1a0rP (58-272) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:2123fe68a859d25e47420d40abdfedc0 on BC2-cluster at Thu Feb 21 22:57:45
2013
Template Search
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3hz4: CRYSTAL STRUCTURE OF THIOREDOXIN FROM METHANOSARCINA MAZEI Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
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2ywm: CRYSTAL STRUCTURE OF GLUTAREDOXIN-LIKE PROTEIN FROM AQUIFEAEOLICUS Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH |
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2ayt: THE CRYSTAL STRUCTURE OF A PROTEIN DISULFIDE OXIDOREDUCTASFROM AQUIFEX AEOLICUS Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH |
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2lnt: SOLUTION STRUCTURE OF E60A MUTANT AGR2 Solved by: NMR, Identified by HHSEARCH |
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2lns: SOLUTION STRUCTURE OF AGR2 RESIDUES 41-175 Solved by: NMR, Identified by HHSEARCH |
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3gl3: CRYSTAL STRUCTURE OF A PUTATIVE THIOL:DISULFIDE INTERCHANGPROTEIN DSBE FROM CHLOROBIUM TEPIDUM Solved by: X-RAY, Resolution: 2.09A, Identified by HHSEARCH |
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3ph9: CRYSTAL STRUCTURE OF THE HUMAN ANTERIOR GRADIENT PROTEIN 3 Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.