SWISS-MODEL Repository - Model Details

Model Overview
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1
220

Sequence
UniProt P13087
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Kunitz_legume

Model 3D Structure
Model information:
Modelled residue range: 31 to 217
Based on template: [ 1r8n ]  
Sequence Identity [%]: 32%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    31      SAPNPVLD IDGEKLRTGT NYYIVPVLRD -HGGGLTVSA TTPNGTFVCP
1r8nA     1       sdaekvyd iegypvflgs eyyivsaiig aggggvrpgr t-rgsm--cp
                                                                      
TARGET               sssss    sssss     ssss       sss                
1r8nA                sssss    sssss     sssss        sssss            


TARGET    78    PRVVQTRKEV DHDRPLAFFP ENPKEDVVRV STDLNINFSA FMPCRWTSST
1r8nA     46    msiiqeqsdl qmglpvrfss peekqgkiyt dteleiefve kpdca--ess
                                                                      
TARGET            sss          sssss       sssss     sssss           s
1r8nA            sssss         sssss       sssss     sssss           s


TARGET    128   VWRLDKYDES TGQYFVTIGG VKGNPGPETI SSWFKIEEFC GSGFYKLVFC
1r8nA     94    kwvivk---d sgearvaigg sedhpqgelv rgffkiekl- gslayklvfc
                                                                      
TARGET          ssssss        ssssss         sss sssssssss     sssssss
1r8nA           ssssss        ssssss         sss sssssssss     sssssss


TARGET    178   PTVCGSCKVK CGDVGIYIDQ KGRRRLALS- --DKPFAFEF NKT ------
1r8nA     140   pksdsgs--- csdiginye- -grrslvlks sddvpfrvvf vkprsgsete
                                                                      
TARGET          ss          ssssssss    sssssss          ss s         
1r8nA           ss          ssssssss    sssssss        ssss s         


TARGET          -                                                     
1r8nA     185   s                                                     
                                                                      
TARGET                                                                
1r8nA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 389b2e569f782c4597ff53a4980d4181 on BC2-cluster at Sun Aug 31 04:14:28 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>389b2e569f782c4597ff53a4980d4181
**************************************************************************
>1r8nA Evalue:0 SeqID:32.461 Method:HHSEARCH Type:MODEL
----------**************-*******************-****************-***-******--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1r8nA          31             217            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 389b2e569f782c4597ff53a4980d4181 on gopt-70.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 04:16:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.