SMTL ID : 4m4d.1 (1 other biounit)

Crystal structure of lipopolysaccharide binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.1: 4 residues within 4Å: Chain A: Y.277, N.279, T.321 Ligands: NAG.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.277 Hydrogen bonds: A:Y.277, A:Y.277, A:N.279 NAG.2: 5 residues within 4Å: Chain A: L.319, E.344, F.346, R.359 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.319, A:E.344, A:R.359, A:R.359 NAG.3: 5 residues within 4Å: Chain A: V.330, N.334, F.367, S.369, H.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.334, A:H.382 NAG.4: 4 residues within 4Å: Chain A: T.371, F.372, N.373 Ligands: NAG.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.373 Hydrogen bonds: A:T.371, A:N.373 NAG.5: 1 residues within 4Å: Ligands: NAG.4 No protein-ligand interaction detected (PLIP)

1 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.6: 23 residues within 4Å: Chain A: I.13, G.17, A.21, A.22, E.24, G.25, A.28, L.72, L.82, S.183, D.187, L.188, Y.191, L.192, L.195, V.256, P.430, P.432, H.434, I.435, V.455, Y.457, R.459 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.13, A:E.24, A:A.28, A:L.72, A:L.82, A:L.188, A:Y.191, A:L.195, A:V.256, A:I.435, A:V.455, A:Y.457 Salt bridges: A:R.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eckert, J.K. et al., The crystal structure of lipopolysaccharide binding protein reveals the location of a frequent mutation that impairs innate immunity. Immunity (2013)

Release Date

2013-10-30

Peptides

Lipopolysaccharide-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipopolysaccharide-binding protein

Related Entries With Identical Sequence