Protein Structure & Model Assessment Tools

Project Title:

The following tools are provided to assess the quality and structural features of protein models and template structures.
Please upload a model or template structure in PDB format. ?

Local Model Quality Estimation:
Anolea ? Anolea atomic mean force potential
Gromos ? Empirical force field
QMEAN6 ? Composite scoring function for model quality estimation [Example]

Global Model Quality Estimation:
DFire ? All-atom distance-dependent statistical potential

Stereochemistry Check:
Procheck ? Stereochemical quality check; min. Resolution: Å

Structural Features:
DSSP ? Secondary Structure, geometrical features, and solvent exposure assignment
Promotif ? Analysis of protein structure motifs

* Disclaimer and user agreement: The use of SWISS-MODEL Server and SWISS-MODEL Workspace is free for both academic and commercial users. However, some of the tools provided on this page may require a valid license for some users. If you are in doubt, please check carefully the licensing conditions for each tools. Links to the original sites are provided in the help file. By using SWISS-MODEL workspace, you confirm that you are legally entitled to use these tools. You also agree to cite SWISS-MODEL Workspace AND the corresponding reference of these tools in any of your publications reporting results obtained from this service.

SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.