[ myWorkspace ]

[  login  ]

Template Identification

Email:
Project Title:
You provided the following Input for new template identification: O35632 Please select the methods for template identification.
InterPro Domain Scan: HMMPfam HMMTigr ProfileScan SuperFamily BlastProDom FPrintScan HMMPIR HMMSmart ScanRegExp
Gapped Blast Query: E-value cutoff: 0.0000000001 0.00000001 0.000001 0.00001 0.0001 0.001 0.01 0.1 Matrix: blosum45, 17(G), 1(E) blosum45, 10(G), 3(E) blosum62, 11(G), 1(E) blosum62, 7(G), 2(E) blosum80, 9(G), 2(E) blosum80, 7(G), 2(E) Descriptions: 10 50 100 500 1000 Alignments: 10 50 100 500 1000
Iterative Profile Blast: Stage 1: PSI-BLAST Profile generation vs. NR Iterations: 2 3 4 5 6 7 8 9 10 Evalue : 0.000000001 0.0000001 0.00001 0.0001 0.001 0.01 0.1 (threshold for multipass inclusions) Matrix: blosum45, 17(G), 1(E) blosum45, 10(G), 3(E) blosum62, 11(G), 1(E) blosum62, 7(G), 2(E) blosum80, 9(G), 2(E) blosum80, 7(G), 2(E) SEG Filter: yes no Stage 2: PSI-BLAST Profile Search Search Database: ExPDB ExPDB100 ExPDB90 ExPDB70 ExPDB50 E-value cutoff: 0.0000000001 0.00000001 0.0000001 0.000001 0.00001 0.0001 0.001 0.01 0.1 1 Matrix: blosum45, 17(G), 1(E) blosum45, 10(G), 3(E) blosum62, 11(G), 1(E) blosum62, 7(G), 2(E) blosum80, 9(G), 2(E) blosum80, 7(G), 2(E) Descriptions: 10 50 100 500 1000 Alignments: 10 50 100 500 1000
HHSearch template library search:

Swiss Institute of Bioinformatics  |   About SWISS-MODEL  |   Help  |   Terms of use  |   News