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Template Identification
Email:
Project Title:
You provided the following Input for new template identification: P32492
Please select the methods for template identification.
InterPro Domain Scan:
HMMPfam
HMMTigr
ProfileScan
SuperFamily
BlastProDom
FPrintScan
HMMPIR
HMMSmart
ScanRegExp
Gapped Blast Query:
E-value cutoff:
0.0000000001
0.00000001
0.000001
0.00001
0.0001
0.001
0.01
0.1
Matrix:
blosum45, 17(G), 1(E)
blosum45, 10(G), 3(E)
blosum62, 11(G), 1(E)
blosum62, 7(G), 2(E)
blosum80, 9(G), 2(E)
blosum80, 7(G), 2(E)
Descriptions:
10
50
100
500
1000
Alignments:
10
50
100
500
1000
Iterative Profile Blast:
Stage 1: PSI-BLAST Profile generation vs. NR
Iterations:
2
3
4
5
6
7
8
9
10
Evalue :
0.000000001
0.0000001
0.00001
0.0001
0.001
0.01
0.1
(threshold for multipass inclusions)
Matrix:
blosum45, 17(G), 1(E)
blosum45, 10(G), 3(E)
blosum62, 11(G), 1(E)
blosum62, 7(G), 2(E)
blosum80, 9(G), 2(E)
blosum80, 7(G), 2(E)
SEG Filter:
yes
no
Stage 2: PSI-BLAST Profile Search
Search Database:
ExPDB
ExPDB100
ExPDB90
ExPDB70
ExPDB50
E-value cutoff:
0.0000000001
0.00000001
0.0000001
0.000001
0.00001
0.0001
0.001
0.01
0.1
1
Matrix:
blosum45, 17(G), 1(E)
blosum45, 10(G), 3(E)
blosum62, 11(G), 1(E)
blosum62, 7(G), 2(E)
blosum80, 9(G), 2(E)
blosum80, 7(G), 2(E)
Descriptions:
10
50
100
500
1000
Alignments:
10
50
100
500
1000
HHSearch template library search: