UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9SQR5 (SINE2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SINE2; | |
F4JVA9 (SFH2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol/phosphatidylcholine transfer protein SFH2; Protein SEC FOURTEEN HOMOLOGS 2; | |
O04848 (H2AXA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable histone H2AXa; HTA5; | |
O22212 (PRP4L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Protein EMBRYO DEFECTIVE 2776; Protein LACHESIS; | |
Q9S9X4 (FBL8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative F-box/LRR-repeat protein 8; | |
O49717 (CDPKF_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calcium-dependent protein kinase 15; | |
Q38914 (ANT_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AP2-like ethylene-responsive transcription factor ANT; Complementing a protein kinase C mutant protein 1; Protein AINTEGUMENTA; Protein DRAGON; Protein OVULE MUTANT; | |
P0DH85 (REM10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | B3 domain-containing protein REM10; Protein REPRODUCTIVE MERISTEM 10; | |
Q9SF12 (IRE1L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Inactive serine/threonine-protein kinase/endoribonuclease IRE1-like; Endoplasmic reticulum-to-nucleus signaling 1-like; Inositol-requiring protein 1-like; | |
Q9M171 (PTR43_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NRT1/ PTR FAMILY 2.1; Protein NAXT1-like 6; Putative nitrate excretion transporter 7; | |
Q9C7U1 (PTR25_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NRT1/ PTR FAMILY 5.12; | |
Q9M1I2 (PTR46_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NRT1/ PTR FAMILY 5.4; | |
Q1PFB9 (AGC17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase AGC1-7; AGC serine/threonine-protein kinase subfamily 1 member 7; | |
Q9CAR9 (PTR20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative protein NRT1/ PTR FAMILY 2.14; | |
Q8RXT4 (NEK4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase Nek4; NimA-related protein kinase 4; | |
Q8W0Z7 (BCAL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Branched-chain-amino-acid aminotransferase-like protein 1; | |
O80612 (APY6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable apyrase 6; ATP-diphosphatase; ATP-diphosphohydrolase; Adenosine diphosphatase; NTPDase; Nucleoside triphosphate diphosphohydrolase 6; | |
Q1PEU4 (PP201_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At2g44880; | |
Q84WV1 (TCPG_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | T-complex protein 1 subunit gamma; CCT-gamma; Chaperonin CCT3; | |
Q9LHL6 (TBL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein trichome birefringence-like 1; | |
Q9LDW3 (PUM11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pumilio homolog 11; | |
Q9FFK3 (EGY2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable zinc metalloprotease EGY2, chloroplastic; Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2; | |
Q9S725 (4CL2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 4-coumarate--CoA ligase 2; 4-coumarate--CoA ligase isoform 2; 4-coumaroyl-CoA synthase 2; Caffeate--CoA ligase; | |
Q9FJP6 (PUB38_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | U-box domain-containing protein 38; Plant U-box protein 38; RING-type E3 ubiquitin transferase PUB38; | |
Q9ZQN8 (CSLA7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Glucomannan 4-beta-mannosyltransferase 7; Cellulose synthase-like protein A7; Glucomannan synthase; Mannan synthase 7; | |
Q95749 (RT03_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein uS3m; Ribosomal protein S3, mitochondrial; | |
P57750 (AGM1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphoacetylglucosamine mutase; Acetylglucosamine phosphomutase; DNA-damage-repair/toleration protein DRT101; N-acetylglucosamine-phosphate mutase; | |
F4HUK6 (AAE1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Butanoate--CoA ligase AAE1; 4-methylpentanoate--CoA ligase AAE2; AMP-binding protein 1; Acyl-activating enzyme 1, peroxisomal; Hexanoate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; | |
P83484 (ATPBN_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ATP synthase subunit beta-2, mitochondrial; | |
Q38871 (CDPK5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calcium-dependent protein kinase 5; Calmodulin-domain protein kinase CDPK isoform 5; | |
Q9LF97 (Y3295_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CBS domain-containing protein CBSCBSPB3; | |
Q9LQC9 (CSLA3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable glucomannan 4-beta-mannosyltransferase 3; Cellulose synthase-like protein A3; Glucomannan synthase; Mannan synthase 3; | |
P83483 (ATPBM_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ATP synthase subunit beta-1, mitochondrial; | |
Q9ZS97 (AB8I_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Iron-sulfur cluster assembly SufBD family protein ABCI8, chloroplastic; ABC transporter I family member 8; Non-intrinsic ABC protein 1; Plastid sufB-like protein; Protein LONG AFTER FAR-RED 6; | |
Q1JPL7 (PME18_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pectinesterase/pectinesterase inhibitor 18; AtPMEpcrA; Pectinesterase inhibitor 18; Pectin methylesterase inhibitor 18; Bifunctional pectinesterase 18/rRNA N-glycosylase; PE 18; 3.1.1.11; 3.2.2.22; Pectin methylesterase 18; Pectin methylesterase 4; AtPME4; Ribosome-inactivating protein; | |
Q9LIN9 (PAGR_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PECTIC ARABINOGALACTAN SYNTHESIS-RELATED; O-fucosyltransferase 26; O-fucosyltransferase family protein; | |
Q9FJQ5 (EIL5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ETHYLENE INSENSITIVE 3-like 5 protein; | |
Q4KSH9 (BARS_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alpha-barbatene synthase; Beta-chamigrene synthase; Terpeneoid synthase 11; Thujopsene synthase; | |
Q9FZ37 (GUX4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4; Glycogenin-like protein 4; Plant glycogenin-like starch initiation protein 4; Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 4; | |
O04499 (PMG1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1; PGAM-I 1; | |
Q8LST2 (WNK7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable serine/threonine-protein kinase WNK7; Protein kinase with no lysine 7; | |
P93305 (M500_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uncharacterized mitochondrial protein AtMg00500; ORF141; | |
Q93WV0 (WRK20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable WRKY transcription factor 20; WRKY DNA-binding protein 20; | |
P0C0B1 (Y1401_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uncharacterized protein At1g24010; | |
Q9LEW0 (UBP22_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ubiquitin C-terminal hydrolase 22; Deubiquitinating enzyme 22; Ubiquitin thioesterase 22; Ubiquitin-specific-processing protease 22; | |
Q9LXV3 (DIT1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dicarboxylate transporter 1, chloroplastic; 2-oxoglutarate/malate translocator 1; | |
Q9LZ17 (RS174_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein eS17w; 40S ribosomal protein S17-4; | |
Q9M1E1 (PTR38_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NRT1/ PTR FAMILY 2.6; Probable nitrate excretion transporter 2; Protein NAXT1-like 1; | |
Q43284 (OLEO3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Oleosin 14.9 kDa; | |
Q9LP41 (HIP29_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Heavy metal-associated isoprenylated plant protein 29; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,240 | 37,334 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30,410 | 5,314 | 346 | 697 | 28 | 271 | 58 | 33 | 8 | 20 | 4 | 68 | 19 | 4 | 1 | 26 | 2 | 1 | 1 | 12 | 1 | 1 | 6 | 3 |